PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_20083_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Trihelix | ||||||||
Protein Properties | Length: 417aa MW: 47531.9 Da PI: 7.1223 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 56.2 | 9.2e-18 | 123 | 205 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekk 70 Wt+qe+ Li+a++e++ +l++g+lk+ +Weevs + ++ g+ ++++qC++k+e+l+kry+++k cra_locus_20083_iso_1_len_1551_ver_3 123 WTHQETVNLIQAYQEKWYSLKKGQLKASQWEEVSVTVaARCGYdepYKTATQCRHKMEKLRKRYRAEKVKPYP 195 **********************************99975667743347******************9987775 PP trihelix 71 rtsessstcpyfdqle 86 ++++yf+ ++ cra_locus_20083_iso_1_len_1551_ver_3 196 ------NSWQYFELMD 205 ......3488998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.3E-19 | 122 | 207 | No hit | No description |
PROSITE profile | PS50090 | 6.11 | 122 | 183 | IPR017877 | Myb-like domain |
SMART | SM00595 | 2.3E-4 | 130 | 212 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
RPGVQHKYIR VGSINYITRT TTTISNCNRA SSTNRLTTST ATTPHHTTNN QTLTTVTAVG 60 KFTMANPPSS SSSPFLQPSH PIYHPHSTSS PSEHPSSPKL KPKPESTAET DLTPPKKTPP 120 LPWTHQETVN LIQAYQEKWY SLKKGQLKAS QWEEVSVTVA ARCGYDEPYK TATQCRHKME 180 KLRKRYRAEK VKPYPNSWQY FELMDRMERG PLPIAARPVA VVKYPQNSNS AGNDDDDDDS 240 DSDDGDVSYG GLDAKKNKLK SINNIVRGDL GMSSNSNRNL NRMTTNPNFG GGGNDRGLRH 300 MRNSMAEKRK NDFDDSDEEE GEDEEEEEEE EDGEEEKENE EGRGVLRKEL AAEIRGFAER 360 FMRMENKKIE MMKETERYRM EMENKRMEMI IESQRKIMDT IGRAFGAHKK VKMTQEI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027176521.1 | 1e-143 | trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A068U5P8 | 1e-142 | A0A068U5P8_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400051788 | 1e-125 | (Solanum tuberosum) |