PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1997_iso_3

Common Name

bzip1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 393aa MW: 41944.9 Da PI: 9.8912

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1997_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.8	4.3e-12	347	388	5	46
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +r rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+ cra_locus_1997_iso_3_len_2827_ver_3 347 RRRRRMIKNRESAARSRARKQAYTLELEAEVAKLKEINEELQ 388 5789999*******************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.1E-5	343	390	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.588	345	390	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.82E-9	347	390	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.4E-12	347	390	No hit	No description
Pfam	PF00170	5.1E-10	347	389	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	350	365	IPR004827	Basic-leucine zipper domain
CDD	cd14707	8.32E-22	352	393	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1900057	Biological Process	positive regulation of leaf senescence
GO:1903648	Biological Process	positive regulation of chlorophyll catabolic process
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MAQPEGSLGK TPGNFPLARQ TSIYSMTFDE LQTLGGLGKD FGSMNMEDLL KNIWTAEETQ 60 ATASTPGPGN VPGGNLQRQG SLTLPRTLSQ RTVDDVWKDL LKESGGTNDR IGVGASNFVP 120 RQSTLGEMTL EEFLVRAGVV REEIQPIEKP SNLGAYGGLA PANVNNNSLV IGFQQAAVND 180 RMLGNQNGGS NNGFSNSSNL LLNGSALRSS QQQQHPQSQP QLQPLFPKQA NVAFASSQLG 240 NANVQQMRNG AQLSSSGATA SVVGMANASM NSTMMKTGVT PTGVMGMAGL RGVTTSVTGE 300 SPGSQLQTDS ISTSSVDTSS LSPSPYAFNE GGRGRRSCSS LEKQVERRRR RMIKNRESAA 360 RSRARKQAYT LELEAEVAKL KEINEELQRK QVC

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MAQPEGSLGK TPGNFPLARQ TSIYSMTFDE LQTLGGLGKD FGSMNMEDLL KNIWTAEETQ  60
ATASTPGPGN VPGGNLQRQG SLTLPRTLSQ RTVDDVWKDL LKESGGTNDR IGVGASNFVP  120
RQSTLGEMTL EEFLVRAGVV REEIQPIEKP SNLGAYGGLA PANVNNNSLV IGFQQAAVND  180
RMLGNQNGGS NNGFSNSSNL LLNGSALRSS QQQQHPQSQP QLQPLFPKQA NVAFASSQLG  240
NANVQQMRNG AQLSSSGATA SVVGMANASM NSTMMKTGVT PTGVMGMAGL RGVTTSVTGE  300
SPGSQLQTDS ISTSSVDTSS LSPSPYAFNE GGRGRRSCSS LEKQVERRRR RMIKNRESAA  360
RSRARKQAYT LELEAEVAKL KEINEELQRK QVC

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027112494.1	1e-153	bZIP transcription factor 46-like isoform X1
Refseq	XP_027112495.1	1e-153	bZIP transcription factor 46-like isoform X1
Refseq	XP_027112507.1	1e-153	bZIP transcription factor 46-like isoform X1
Refseq	XP_027112509.1	1e-153	bZIP transcription factor 46-like isoform X1
Swissprot	Q9M7Q4	3e-85	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	Q400L1	0.0	Q400L1_CATRO; Transcription factor BZIP1
STRING	XP_009631698.1	1e-140	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]