PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1993_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 506aa MW: 55783.2 Da PI: 5.3308 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 423.2 | 2.2e-129 | 137 | 506 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 l++lL++cAeav++ d + a+al++ l++ +s +g+p+qRl ay++e+L+arl++s+s +yk+l+++e + cra_locus_1993_iso_1_len_2556_ver_3 137 LKQLLVACAEAVANVDIQTAEALMNVLEQKVSVSGEPIQRLSAYMLEGLRARLLSSGSIIYKKLKCKEPT---G 207 689******************************************************************9...9 PP GRAS 75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148 e +++++++++++P++kf+++ N I ea+e+e+r+HiiDf+i qG QW++L+qaLa Rp+gpp +RiTgv+ cra_locus_1993_iso_1_len_2556_ver_3 208 PELMSYMTVLYQICPYYKFAYMSSNVIIGEAMENENRIHIIDFQIAQGSQWVSLIQALAHRPGGPPFIRITGVD 281 99999********************************************************************* PP GRAS 149 spesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220 +++s+ + l +g+rLak+Ae++gvpfef+ + + +++le+L+v++gEalaV + ++lh+++desv++ cra_locus_1993_iso_1_len_2556_ver_3 282 DSQSTiaRGGGLDLVGKRLAKVAESCGVPFEFHG-AGISGCEVQLESLQVRHGEALAVTFPYMLHHMPDESVNT 354 *999999999************************.788999********************************* PP GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 ++rd++L+lvkslsPkvv+++eqea++n+++F+ rf+e+++yy+a+f+s++a pre+ +ri+ E+++++r+i cra_locus_1993_iso_1_len_2556_ver_3 355 MNHRDRLLRLVKSLSPKVVTLIEQEANTNTAPFFPRFCETIDYYTAMFESIDAARPREDGQRISTEEHCVARDI 428 ************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368 vn++acega+r+erhe ++kWr rl++aGF+p pls ++ + +k ll++++++ yr+ e++g+l+lgWk+r+L cra_locus_1993_iso_1_len_2556_ver_3 429 VNIIACEGADRVERHEPFGKWRLRLTMAGFTPCPLSFSVGNAMKDLLKEYNMN-YRLGERDGALYLGWKNRALA 501 ***************************************************88.******************** PP GRAS 369 svSaW 373 ++SaW cra_locus_1993_iso_1_len_2556_ver_3 502 TTSAW 506 ***** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.179 | 111 | 488 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.5E-127 | 137 | 506 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin |
Sequence ? help Back to Top |
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Protein Sequence Length: 506 aa Download sequence Send to blast |
MADNSSSQGA PVSFQACNEQ FFTLESSPAA DCIFSDSPSA ASIASNRSPF SPQCSQSYMS 60 DLYHSSDHNY GSPLSGSSGV DDGGDLRHVL RELEMKLLGP ESDLDDSCSC SFSNVASQHA 120 MPQRRNPIVE MAPSLDLKQL LVACAEAVAN VDIQTAEALM NVLEQKVSVS GEPIQRLSAY 180 MLEGLRARLL SSGSIIYKKL KCKEPTGPEL MSYMTVLYQI CPYYKFAYMS SNVIIGEAME 240 NENRIHIIDF QIAQGSQWVS LIQALAHRPG GPPFIRITGV DDSQSTIARG GGLDLVGKRL 300 AKVAESCGVP FEFHGAGISG CEVQLESLQV RHGEALAVTF PYMLHHMPDE SVNTMNHRDR 360 LLRLVKSLSP KVVTLIEQEA NTNTAPFFPR FCETIDYYTA MFESIDAARP REDGQRISTE 420 EHCVARDIVN IIACEGADRV ERHEPFGKWR LRLTMAGFTP CPLSFSVGNA MKDLLKEYNM 480 NYRLGERDGA LYLGWKNRAL ATTSAW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-58 | 144 | 506 | 26 | 378 | Protein SCARECROW |
5b3h_A | 2e-58 | 144 | 506 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-58 | 144 | 506 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027087498.1 | 0.0 | scarecrow-like protein 13 | ||||
Refseq | XP_027087500.1 | 0.0 | scarecrow-like protein 13 | ||||
Refseq | XP_027087501.1 | 0.0 | scarecrow-like protein 13 | ||||
Refseq | XP_027087502.1 | 0.0 | scarecrow-like protein 13 | ||||
Refseq | XP_027087503.1 | 0.0 | scarecrow-like protein 13 | ||||
Swissprot | Q9M0M5 | 0.0 | SCL13_ARATH; Scarecrow-like protein 13 | ||||
TrEMBL | A0A068U8I5 | 0.0 | A0A068U8I5_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400034763 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |