PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1993_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 506aa    MW: 55783.2 Da    PI: 5.3308
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1993_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.22.2e-1291375061373
                                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 
                                          l++lL++cAeav++ d + a+al++ l++ +s +g+p+qRl ay++e+L+arl++s+s +yk+l+++e +    
  cra_locus_1993_iso_1_len_2556_ver_3 137 LKQLLVACAEAVANVDIQTAEALMNVLEQKVSVSGEPIQRLSAYMLEGLRARLLSSGSIIYKKLKCKEPT---G 207
                                          689******************************************************************9...9 PP

                                 GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148
                                           e +++++++++++P++kf+++  N  I ea+e+e+r+HiiDf+i qG QW++L+qaLa Rp+gpp +RiTgv+
  cra_locus_1993_iso_1_len_2556_ver_3 208 PELMSYMTVLYQICPYYKFAYMSSNVIIGEAMENENRIHIIDFQIAQGSQWVSLIQALAHRPGGPPFIRITGVD 281
                                          99999********************************************************************* PP

                                 GRAS 149 spesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220
                                          +++s+  +   l  +g+rLak+Ae++gvpfef+  +  +  +++le+L+v++gEalaV + ++lh+++desv++
  cra_locus_1993_iso_1_len_2556_ver_3 282 DSQSTiaRGGGLDLVGKRLAKVAESCGVPFEFHG-AGISGCEVQLESLQVRHGEALAVTFPYMLHHMPDESVNT 354
                                          *999999999************************.788999********************************* PP

                                 GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                                           ++rd++L+lvkslsPkvv+++eqea++n+++F+ rf+e+++yy+a+f+s++a  pre+ +ri+ E+++++r+i
  cra_locus_1993_iso_1_len_2556_ver_3 355 MNHRDRLLRLVKSLSPKVVTLIEQEANTNTAPFFPRFCETIDYYTAMFESIDAARPREDGQRISTEEHCVARDI 428
                                          ************************************************************************** PP

                                 GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                                          vn++acega+r+erhe ++kWr rl++aGF+p pls ++ + +k ll++++++ yr+ e++g+l+lgWk+r+L 
  cra_locus_1993_iso_1_len_2556_ver_3 429 VNIIACEGADRVERHEPFGKWRLRLTMAGFTPCPLSFSVGNAMKDLLKEYNMN-YRLGERDGALYLGWKNRALA 501
                                          ***************************************************88.******************** PP

                                 GRAS 369 svSaW 373
                                          ++SaW
  cra_locus_1993_iso_1_len_2556_ver_3 502 TTSAW 506
                                          ***** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.179111488IPR005202Transcription factor GRAS
PfamPF035147.5E-127137506IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MADNSSSQGA PVSFQACNEQ FFTLESSPAA DCIFSDSPSA ASIASNRSPF SPQCSQSYMS  60
DLYHSSDHNY GSPLSGSSGV DDGGDLRHVL RELEMKLLGP ESDLDDSCSC SFSNVASQHA  120
MPQRRNPIVE MAPSLDLKQL LVACAEAVAN VDIQTAEALM NVLEQKVSVS GEPIQRLSAY  180
MLEGLRARLL SSGSIIYKKL KCKEPTGPEL MSYMTVLYQI CPYYKFAYMS SNVIIGEAME  240
NENRIHIIDF QIAQGSQWVS LIQALAHRPG GPPFIRITGV DDSQSTIARG GGLDLVGKRL  300
AKVAESCGVP FEFHGAGISG CEVQLESLQV RHGEALAVTF PYMLHHMPDE SVNTMNHRDR  360
LLRLVKSLSP KVVTLIEQEA NTNTAPFFPR FCETIDYYTA MFESIDAARP REDGQRISTE  420
EHCVARDIVN IIACEGADRV ERHEPFGKWR LRLTMAGFTP CPLSFSVGNA MKDLLKEYNM  480
NYRLGERDGA LYLGWKNRAL ATTSAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5814450626378Protein SCARECROW
5b3h_A2e-5814450625377Protein SCARECROW
5b3h_D2e-5814450625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027087498.10.0scarecrow-like protein 13
RefseqXP_027087500.10.0scarecrow-like protein 13
RefseqXP_027087501.10.0scarecrow-like protein 13
RefseqXP_027087502.10.0scarecrow-like protein 13
RefseqXP_027087503.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A068U8I50.0A0A068U8I5_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000347630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111