PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_19703_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 167aa MW: 19307.5 Da PI: 10.061 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.2 | 1.9e-18 | 19 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W+tIa +++ gRt++++k++w+++l cra_locus_19703_iso_1_len_498_ver_3 19 RGKFSPEEEQTILNLHSVLGNK-WSTIATHLP-GRTDNEIKNFWNTHL 64 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 3.938 | 1 | 13 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 8.36E-22 | 2 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-10 | 2 | 24 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.376 | 14 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-16 | 18 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-17 | 19 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.08E-12 | 21 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-24 | 25 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
XGKSCRLRWT NYLRPDIKRG KFSPEEEQTI LNLHSVLGNK WSTIATHLPG RTDNEIKNFW 60 NTHLKKKLIQ NGIDPITHRP APPTATTWPH LIALSSNLND IIQQYSLQKQ MAANLQYYLQ 120 YLLQPPPPPP LLLEPSNMPP ATSSSYNNNI IVNYHEQKQK QQQQQQX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-20 | 2 | 68 | 42 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010027860.1 | 5e-61 | PREDICTED: transcription factor MYB34 | ||||
Swissprot | Q9SBF3 | 3e-54 | MYB92_ARATH; Transcription factor MYB92 | ||||
TrEMBL | A0A059AKZ8 | 1e-59 | A0A059AKZ8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010027860.1 | 2e-60 | (Eucalyptus grandis) |
Publications ? help Back to Top | |||
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