PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_19670_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 283aa    MW: 32102.8 Da    PI: 5.8712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_19670_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-182978255
                                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                           y+GVr++  +g+WvAeIr+p++   r+   lg+fgtaeeAa a+++a+++l+g
  cra_locus_19670_iso_1_len_1622_ver_3 29 EYRGVRQRT-WGKWVAEIREPKK---RTDSGLGSFGTAEEAAMAYDEAARRLYG 78
                                          69****999.**********965...59999*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.67E-282888No hitNo description
Gene3DG3DSA:3.30.730.103.1E-262987IPR001471AP2/ERF domain
SMARTSM003801.3E-302992IPR001471AP2/ERF domain
PROSITE profilePS5103220.0472986IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-192987IPR016177DNA-binding domain
PfamPF008479.0E-122978IPR001471AP2/ERF domain
PRINTSPR003676.0E-103041IPR001471AP2/ERF domain
PRINTSPR003676.0E-106888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDSYRKSLLK PWKKGPARGK GGPQNAMCEY RGVRQRTWGK WVAEIREPKK RTDSGLGSFG  60
TAEEAAMAYD EAARRLYGPD AYLNLPHLRC NFNPLNKSHK FKWFSSNNVI SIPNSGLLNL  120
NAQPSVHVIH QKLQELKKTG FFCQTSSSSS SSNPIHDLDT IGNQPHIENL DTMDKQVECP  180
PENRFINQEE KPQIDLNEFL QQIGIVQKED KPDAFGASSS SKITEKDVPL NEDGFASFPD  240
SFFSWETTSE IPDIEYHQEA ENSNFHVYNV ADDLVFPTSI WNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-153091667ATERF1
3gcc_A4e-153091667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027177522.11e-131dehydration-responsive element-binding protein 2F
SwissprotQ9SVX53e-78DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A068UNP51e-128A0A068UNP5_COFCA; Uncharacterized protein
STRINGXP_009804771.11e-111(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]