PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_19483_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 345aa    MW: 39346.6 Da    PI: 7.5272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_19483_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13167214355
                                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                           + h ++Er+RR+++ ++f +L  l+P +     kK++Ka++L  A++Y+k+Lq
  cra_locus_19483_iso_1_len_1552_ver_3 167 QDHIMAERKRREKLSQRFIQLSALVPGL-----KKMDKASVLGDAIKYLKQLQ 214
                                           6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.012164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-11167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-17168226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-17168229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-12169218No hitNo description
SMARTSM003537.9E-15170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEVANFRSLA ELGIDHGFIH QTWPLNSFDE LSSLSMAASA FGEHYQMQQH SSDHHQIFSQ  60
KHSLELSENG VLDRPVKQQK TNSWSSSNSH LSNPQIDGSP NYHVVNSGYT DHHHQSMVMK  120
PKEEIISMNF PRDLMVSQGS IGNQNYVFKT NQGAKSLSPK ARLTQAQDHI MAERKRREKL  180
SQRFIQLSAL VPGLKKMDKA SVLGDAIKYL KQLQDKVKNL EEQTKKRTME SVVFVKKYEL  240
QFDTDNSSSN ENFSGEPINE PLPEIEARCS DKDVLIRIHC DRRKGILDKT VSEIEKLHLS  300
VINSSVMTFG SLTLDITIIA QMEEEFNMSM KDLVQNLRVT LKKFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13168217857Transcription factor MYC2
5gnj_B1e-13168217857Transcription factor MYC2
5gnj_E1e-13168217857Transcription factor MYC2
5gnj_F1e-13168217857Transcription factor MYC2
5gnj_G1e-13168217857Transcription factor MYC2
5gnj_I1e-13168217857Transcription factor MYC2
5gnj_M1e-13168217857Transcription factor MYC2
5gnj_N1e-13168217857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERKRRE
2173178RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268443.31e-133PREDICTED: transcription factor bHLH18
RefseqXP_010647980.11e-133PREDICTED: transcription factor bHLH18
RefseqXP_019074348.11e-133PREDICTED: transcription factor bHLH18
SwissprotQ9T0725e-63BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A438JN421e-132A0A438JN42_VITVI; Transcription factor bHLH25
TrEMBLD7T3I81e-132D7T3I8_VITVI; Uncharacterized protein
STRINGVIT_03s0088g01240.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461