PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_19395_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | WRKY | ||||||||
Protein Properties | Length: 220aa MW: 25278.3 Da PI: 8.1828 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.5 | 7.3e-30 | 58 | 115 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++dp+v+++tY+++Hnh cra_locus_19395_iso_2_len_1187_ver_3 58 DCWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRTDPTVLIVTYTSTHNHA 115 99***********************9988****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-30 | 47 | 115 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.54E-25 | 55 | 115 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-33 | 56 | 116 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.712 | 58 | 117 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-25 | 58 | 114 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEDTNSSASE KFNPKISKES LPPAQKHKKR KVAQKVIVTT VKMETTDKKQ KKEGPPLDCW 60 SWRKYGQKPI KGSPYPRGYY RCSTSKGCSA KKQVERCRTD PTVLIVTYTS THNHATTVVA 120 SSDLVEKQKE KVMTPKQEEE KEESVKNEKL GGSEDPFREN IESENPCETY ENITTTTTTS 180 SYKSEENDFY DELEELPTSS FFSSFMRRNF FEERILVNPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-19 | 58 | 114 | 18 | 76 | Disease resistance protein RRS1 |
5w3x_D | 7e-19 | 58 | 114 | 18 | 76 | Disease resistance protein RRS1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012834230.1 | 2e-66 | PREDICTED: probable WRKY transcription factor 35 | ||||
TrEMBL | A0A022S217 | 4e-65 | A0A022S217_ERYGU; Uncharacterized protein | ||||
STRING | Migut.D00078.1.p | 6e-66 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11281 | 20 | 25 |