PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_19353_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 299aa MW: 32245.2 Da PI: 8.2706 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.4 | 4.5e-30 | 98 | 151 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl cra_locus_19353_iso_2_len_1038_ver_3 98 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 151 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.061 | 95 | 154 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-19 | 95 | 155 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-30 | 97 | 156 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-23 | 99 | 151 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-8 | 101 | 150 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
XGNSHHSQAL SSSNNLKSFN LNDEATTITA TRSRDQMGMD IDETDLIREG SDSRKTRRIT 60 EGGATEEADS SAAARNTNNN SNNNETGADD GSARTLKRPR LVWTPQLHKR FVDVVAHLGI 120 KNAVPKTIMQ LMNVEGLTRE NVASHLQKYR LYLKRMQGLS TEGPSPSDHL FASTPVPQSL 180 HESAGGGSGG GGSAHGHGQG HSHGHAHANG NGNGHMGMPI PMPYPPPNGA QMVSVPMIGM 240 AGHMGIPGPT PGGYHGYESH HHHHHHHHQY GMVQQQRDWS GNKFGPVTPY SHHVTPNDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-34 | 98 | 154 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00014 | PBM | Transfer from AT3G46640 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027184783.1 | 1e-122 | transcription factor LUX | ||||
TrEMBL | A0A068UN94 | 1e-124 | A0A068UN94_COFCA; Uncharacterized protein | ||||
STRING | VIT_06s0004g05120.t01 | 5e-88 | (Vitis vinifera) |