PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_19339_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRF

Protein Properties

Length: 448aa MW: 48470.7 Da PI: 8.2286

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_19339_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	80.6	1.4e-25	192	235	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e cra_locus_19339_iso_1_len_1496_ver_3 192 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPGE 235 79***************************************876 PP
2	QLQ	42.3	2.3e-15	110	144	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +F+ Q+q+L+ Q+l+y++++a++ vPpeLl ++ cra_locus_19339_iso_1_len_1496_ver_3 110 YFSLGQWQELELQALIYRHMLAGASVPPELLHLVK 144 69999*************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.1E-7	109	145	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.017	110	145	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.8E-11	111	143	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.202	192	236	IPR014977	WRC domain
Pfam	PF08879	9.3E-22	193	234	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
XSLSLSLSMD FNLKQWREQQ QQHESEQEQE QQTPSAKLPR LLLLDTQHHQ QPPSDSSSAL 60 PLFVTEPTTN TKLNSSSSSN NLSAYPPPHH PDSSTTKFSR GMGGSSSSNY FSLGQWQELE 120 LQALIYRHML AGASVPPELL HLVKKSLFNS SSSAHHHPYN YLTHHPLHHH YPHFQSAAAL 180 MQTGYWGRGG MDPEPGRCRR TDGKKWRCSR DVVAGQKYCE RHMHRGRNRS RKPGEIPTPT 240 TTTTTSAAAS GGNAGGGAGM LKSSNINYNA ANQSLAAMIG HGHGHGGGGN HNFAFSGHSP 300 SIDLLQLSQR SSESMVETEN DVSGNEKSSG QILRHFFDDW PRSLQQESEN GGSSGRGSVT 360 STTNNLSISD FSLKLSTGDD HHQVGSVERA RGGGGHTNWS SSWGTNQVAS MGGPLAEALR 420 SSTSNSSPTS VLHQLPKASA SEASYIST

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

XSLSLSLSMD FNLKQWREQQ QQHESEQEQE QQTPSAKLPR LLLLDTQHHQ QPPSDSSSAL  60
PLFVTEPTTN TKLNSSSSSN NLSAYPPPHH PDSSTTKFSR GMGGSSSSNY FSLGQWQELE  120
LQALIYRHML AGASVPPELL HLVKKSLFNS SSSAHHHPYN YLTHHPLHHH YPHFQSAAAL  180
MQTGYWGRGG MDPEPGRCRR TDGKKWRCSR DVVAGQKYCE RHMHRGRNRS RKPGEIPTPT  240
TTTTTSAAAS GGNAGGGAGM LKSSNINYNA ANQSLAAMIG HGHGHGGGGN HNFAFSGHSP  300
SIDLLQLSQR SSESMVETEN DVSGNEKSSG QILRHFFDDW PRSLQQESEN GGSSGRGSVT  360
STTNNLSISD FSLKLSTGDD HHQVGSVERA RGGGGHTNWS SSWGTNQVAS MGGPLAEALR  420
SSTSNSSPTS VLHQLPKASA SEASYIST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027173882.1	1e-146	growth-regulating factor 4
TrEMBL	A0A068V485	1e-140	A0A068V485_COFCA; Uncharacterized protein
STRING	VIT_08s0007g03760.t01	1e-132	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3283	21	38