PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_19292_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 518aa    MW: 57765.9 Da    PI: 5.8981
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_19292_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.47.3e-911585182373
                                  GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 
                                           v+ L++ Ae++++++l+l++ +L rl+++ +sp+g+++qR+a+yf+eAL++ l++      ++ ++++ s+ +
  cra_locus_19292_iso_2_len_1730_ver_3 158 VDELIRLAECFETNSLHLTHVILGRLNQRlRSPTGKALQRAAFYFKEALQSLLTG------STRSTRPLSSPD 224
                                           678*************************99*************************......666777777778 PP

                                  GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppsl 142
                                           ++++++a+k+fs++sPi+ fs +taNqa+leaveg+  vH+iDf+i+ G++W+++l++La+++     +pp l
  cra_locus_19292_iso_2_len_1730_ver_3 225 VIQSIKAHKAFSNISPIPMFSSFTANQAVLEAVEGAVLVHVIDFEIGLGGHWASFLKELADKAecrkVNPPVL 297
                                           ************************************************************877665588**** PP

                                  GRAS 143 RiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlld 215
                                           RiT+v+ +e   + e + ++e+La+fA+el++ fe+++++ +++e l+++++++ +gE++aV l+  ++r + 
  cra_locus_19292_iso_2_len_1730_ver_3 298 RITAVVGEE--YAMESKLIRENLAQFARELNIGFEIDFVLIRTFEFLSFKSIKFMEGEKIAVLLSPTIFRRV- 367
                                           *******66..999999***************************************************9998. PP

                                  GRAS 216 esvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleak......lprese 280
                                                    + +L+ ++++sP+vvv v++e  +  ++++F + +++ le++s+l++slea        +  ++
  cra_locus_19292_iso_2_len_1730_ver_3 368 -----G---SGFLNDLRRISPHVVVNVDNEglVGFGTTTFRQTVINGLEFFSTLMESLEAAngggggGGGGDD 432
                                           .....3...48*******************65566***********************77745555545566* PP

                                  GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                                           +++k+E+++l ++i ++v ++g++          Wre++  aG++pv ls++a  qa+ l+r+v+++g++v  
  cra_locus_19292_iso_2_len_1730_ver_3 433 WMRKIENFVLFPKILEAVGAAGRR-------GTPWREAFVGAGLRPVGLSQFADFQADGLIRRVQVRGFHVGR 498
                                           **********************98.......789*************************************** PP

                                  GRAS 354 esgslvlgWkdrpLvsvSaW 373
                                           ++++++l+W++r+Lv++SaW
  cra_locus_19292_iso_2_len_1730_ver_3 499 RQAEMLLCWQERALVATSAW 518
                                           ******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.52131499IPR005202Transcription factor GRAS
PfamPF035142.5E-88158518IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
XPSPVTDHHH HHLKPPPNSS PINTTTTVWE DHHQPIIDQH PAEEEEDQDH VLNNDFNWDS  60
LMREFGLHED NSNLKPISQL VQTDSPQTQY LTLPEFPIVH QSFDNSSQLI LPPPNDLFLT  120
DTSSPYGGGV FDNLTGSDAR HMTNNNWNNN NNIGFDYVDE LIRLAECFET NSLHLTHVIL  180
GRLNQRLRSP TGKALQRAAF YFKEALQSLL TGSTRSTRPL SSPDVIQSIK AHKAFSNISP  240
IPMFSSFTAN QAVLEAVEGA VLVHVIDFEI GLGGHWASFL KELADKAECR KVNPPVLRIT  300
AVVGEEYAME SKLIRENLAQ FARELNIGFE IDFVLIRTFE FLSFKSIKFM EGEKIAVLLS  360
PTIFRRVGSG FLNDLRRISP HVVVNVDNEG LVGFGTTTFR QTVINGLEFF STLMESLEAA  420
NGGGGGGGGG DDWMRKIENF VLFPKILEAV GAAGRRGTPW REAFVGAGLR PVGLSQFADF  480
QADGLIRRVQ VRGFHVGRRQ AEMLLCWQER ALVATSAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-2316351825378Protein SCARECROW
5b3h_A6e-2316351824377Protein SCARECROW
5b3h_D6e-2316351824377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075597.10.0scarecrow-like protein 15
SwissprotO232101e-133SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A068U5B90.0A0A068U5B9_COFCA; Uncharacterized protein
STRINGXP_009803270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]