PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_19292_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 515aa    MW: 57354.5 Da    PI: 5.572
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_19292_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.47.2e-911555152373
                                  GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 
                                           v+ L++ Ae++++++l+l++ +L rl+++ +sp+g+++qR+a+yf+eAL++ l++      ++ ++++ s+ +
  cra_locus_19292_iso_1_len_1721_ver_3 155 VDELIRLAECFETNSLHLTHVILGRLNQRlRSPTGKALQRAAFYFKEALQSLLTG------STRSTRPLSSPD 221
                                           678*************************99*************************......666777777778 PP

                                  GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppsl 142
                                           ++++++a+k+fs++sPi+ fs +taNqa+leaveg+  vH+iDf+i+ G++W+++l++La+++     +pp l
  cra_locus_19292_iso_1_len_1721_ver_3 222 VIQSIKAHKAFSNISPIPMFSSFTANQAVLEAVEGAVLVHVIDFEIGLGGHWASFLKELADKAecrkVNPPVL 294
                                           ************************************************************877665588**** PP

                                  GRAS 143 RiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlld 215
                                           RiT+v+ +e   + e + ++e+La+fA+el++ fe+++++ +++e l+++++++ +gE++aV l+  ++r + 
  cra_locus_19292_iso_1_len_1721_ver_3 295 RITAVVGEE--YAMESKLIRENLAQFARELNIGFEIDFVLIRTFEFLSFKSIKFMEGEKIAVLLSPTIFRRV- 364
                                           *******66..999999***************************************************9998. PP

                                  GRAS 216 esvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleak......lprese 280
                                                    + +L+ ++++sP+vvv v++e  +  ++++F + +++ le++s+l++slea        +  ++
  cra_locus_19292_iso_1_len_1721_ver_3 365 -----G---SGFLNDLRRISPHVVVNVDNEglVGFGTTTFRQTVINGLEFFSTLMESLEAAngggggGGGGDD 429
                                           .....3...48*******************65566***********************77745555545566* PP

                                  GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                                           +++k+E+++l ++i ++v ++g++          Wre++  aG++pv ls++a  qa+ l+r+v+++g++v  
  cra_locus_19292_iso_1_len_1721_ver_3 430 WMRKIENFVLFPKILEAVGAAGRR-------GTPWREAFVGAGLRPVGLSQFADFQADGLIRRVQVRGFHVGR 495
                                           **********************98.......789*************************************** PP

                                  GRAS 354 esgslvlgWkdrpLvsvSaW 373
                                           ++++++l+W++r+Lv++SaW
  cra_locus_19292_iso_1_len_1721_ver_3 496 RQAEMLLCWQERALVATSAW 515
                                           ******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.52128496IPR005202Transcription factor GRAS
PfamPF035142.5E-88155515IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
XPSPVTDHHL KPPPNSSPIN TTTTVWEDHH QPIIDQHPAE EEEDQDHVLN NDFNWDSLMR  60
EFGLHEDNSN LKPISQLVQT DSPQTQYLTL PEFPIVHQSF DNSSQLILPP PNDLFLTDTS  120
SPYGGGVFDN LTGSDARHMT NNNWNNNNNI GFDYVDELIR LAECFETNSL HLTHVILGRL  180
NQRLRSPTGK ALQRAAFYFK EALQSLLTGS TRSTRPLSSP DVIQSIKAHK AFSNISPIPM  240
FSSFTANQAV LEAVEGAVLV HVIDFEIGLG GHWASFLKEL ADKAECRKVN PPVLRITAVV  300
GEEYAMESKL IRENLAQFAR ELNIGFEIDF VLIRTFEFLS FKSIKFMEGE KIAVLLSPTI  360
FRRVGSGFLN DLRRISPHVV VNVDNEGLVG FGTTTFRQTV INGLEFFSTL MESLEAANGG  420
GGGGGGGDDW MRKIENFVLF PKILEAVGAA GRRGTPWREA FVGAGLRPVG LSQFADFQAD  480
GLIRRVQVRG FHVGRRQAEM LLCWQERALV ATSAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-2316051525378Protein SCARECROW
5b3h_A5e-2316051524377Protein SCARECROW
5b3h_D5e-2316051524377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075597.10.0scarecrow-like protein 15
SwissprotO232101e-133SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A068U5B90.0A0A068U5B9_COFCA; Uncharacterized protein
STRINGXP_009803270.10.0(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]