PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_19246_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TALE
Protein Properties Length: 153aa    MW: 17795.8 Da    PI: 7.0747
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_19246_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.33.4e-10791142055
                                          HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                             Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                          +k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  cra_locus_19246_iso_2_len_529_ver_3  79 YKWPYPSETEKVALAEATGLDQKQINNWFINQRKRH 114
                                          5679*****************************985 PP
2ELK39.51.2e-133455122
                                  ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                                         ELK++LlrKYsgyL+sLkqE+s
  cra_locus_19246_iso_2_len_529_ver_3 34 ELKNHLLRKYSGYLSSLKQELS 55
                                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011883.5E-73455IPR005539ELK domain
PROSITE profilePS5121311.2963454IPR005539ELK domain
PfamPF037897.9E-113455IPR005539ELK domain
PROSITE profilePS5007112.81154117IPR001356Homeobox domain
SuperFamilySSF466891.97E-2055129IPR009057Homeodomain-like
SMARTSM003891.5E-1256121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.9E-2859120IPR009057Homeodomain-like
CDDcd000865.83E-1266118No hitNo description
PfamPF059203.8E-1774113IPR008422Homeobox KN domain
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
XEKCEGVGSS EEDQDNSGGE TELPEIDPRA EDRELKNHLL RKYSGYLSSL KQELSKKKKK  60
GKLPKDARQK LLSWWELHYK WPYPSETEKV ALAEATGLDQ KQINNWFINQ RKRHWKPSED  120
MQFMVMDGLH PQNAAALYME GHYMGEGPYR LGP
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016441623.19e-97PREDICTED: homeotic protein knotted-1-like isoform X2
RefseqXP_022870905.11e-96homeotic protein knotted-1 isoform X1
SwissprotQ413305e-97KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A2R6Q0L06e-96A0A2R6Q0L0_ACTCH; Homeotic protein like
STRINGXP_009598343.14e-96(Nicotiana tomentosiformis)