PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_19220_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 357aa    MW: 40075.7 Da    PI: 4.4171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_19220_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-191665255
                                   AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                          ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  cra_locus_19220_iso_1_len_1164_ver_3 16 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 65
                                          789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.48E-321572No hitNo description
SuperFamilySSF541712.94E-191673IPR016177DNA-binding domain
PROSITE profilePS5103219.5991673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-271672IPR001471AP2/ERF domain
PfamPF008478.5E-141665IPR001471AP2/ERF domain
SMARTSM003801.4E-361679IPR001471AP2/ERF domain
PRINTSPR003674.8E-81728IPR001471AP2/ERF domain
PRINTSPR003674.8E-83955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
XAIGGGGGGA RRARKRFVGV RQRPSGRWVA EIKDTIQKIR VWLGTFDTAE EAARAYDEAA  60
CLLRGSNTRT NFWPCSSNSS SNPSSNSALP SKITNLLLSR LKARNNSLSS SSSTNSVPVS  120
SNSAPINHHH SQRKTDELEA DNFLDTNEEF TDFLNDFDEY PPESCSIQND SGGKAKLGLD  180
LGEIVQGKTE EEKNNNNNNH VEEEIMEFNF GEEIGFCYDY SPFEIAGEIV EEEEEIDYGG  240
ENYDPSMMMM KRMNYERKFS ASLYAFNGIN ECLRLKLKSS SPPTLIQQER SDLLSRLRIA  300
CSSKNQEKND EASNEEGLME NKHHEEEEEE ENGSKEVLQE EGSIWNSIDL PPICYVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-15482480Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074475.11e-101ethylene-responsive transcription factor ERN1-like
RefseqXP_027152650.11e-101ethylene-responsive transcription factor ERN1-like
TrEMBLA0A2R6P9K61e-106A0A2R6P9K6_ACTCH; Ethylene-responsive transcription factor RAP2-11 like
STRINGcassava4.1_008867m4e-94(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037