PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1920_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HD-ZIP

Protein Properties

Length: 913aa MW: 100978 Da PI: 6.5799

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1920_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	20	78	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ cra_locus_1920_iso_4_len_3870_ver_3 20 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP
2	START	177	1.1e-55	236	444	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdet 75 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++ cra_locus_1920_iso_4_len_3870_ver_3 236 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSVGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRD 308 789*****************************************************.8888888888* PP -SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSE CS START 76 lakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvv 143 ++++++++v+ ++ g+++l +++l+a+++l+p Rdf+ +R++ +++g++v++++S++++q+ p+ +++v cra_locus_1920_iso_4_len_3870_ver_3 309 CRAVDVMNVLPTAngGTIELLYMQLYAPTTLAPaRDFWLLRFTSVMEDGSLVVCERSLSNTQNGPSmppVHNFV 382 *******9999*********************************************9999999* PP E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 144 RaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 Rae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l++s+++ ++kt++a+l+++++ cra_locus_1920_iso_4_len_3870_ver_3 383 RAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLYESSAVLAQKTTMAALRHLRQ 444 *********************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.483	15	79	IPR001356	Homeobox domain
SMART	SM00389	1.2E-15	17	83	IPR001356	Homeobox domain
CDD	cd00086	1.06E-16	20	80	No hit	No description
SuperFamily	SSF46689	8.55E-17	20	82	IPR009057	Homeodomain-like
Pfam	PF00046	3.3E-16	21	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.8E-18	22	78	IPR009057	Homeodomain-like
CDD	cd14686	1.97E-6	72	111	No hit	No description
CDD	cd08875	2.46E-77	231	446	No hit	No description
PROSITE profile	PS50848	24.138	231	454	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.9E-22	233	441	IPR023393	START-like domain
SuperFamily	SSF55961	2.61E-37	235	446	No hit	No description
SMART	SM00234	8.4E-42	235	445	IPR002913	START domain
Pfam	PF01852	1.9E-53	236	444	IPR002913	START domain
Pfam	PF08670	1.9E-50	770	912	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MATACKDGNS NKSAVMDNGK YVRYTPEQVE ALERLYHECP KPSSIRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF 120 RQQTPTVILK FFSLSIXXWA HSLYAIMVYL VSXFHVGLSL DSLISXSIEK VAFFFICLRG 180 HWLQKIQVCR VSAVFVVGSF SWLQNSCFVN IALXCVFVDG LWNLECFCIF SRLLSIAEET 240 LTEFLSKATG TAVEWVQMPG MKPGPDSVGI VAISHGCTGV AARACGLVGL EPTRVAEILK 300 DRPSWFRDCR AVDVMNVLPT ANGGTIELLY MQLYAPTTLA PARDFWLLRF TSVMEDGSLV 360 VCERSLSNTQ NGPSMPPVHN FVRAEMLPSG YLIRPCEGGG SIIHIVDHMN LEAWSVPEVL 420 RPLYESSAVL AQKTTMAALR HLRQIAHEVS QTNVTNWARR PAALRALSQR LSRGFNEALN 480 GLADEGWSLI GNDGMDDVTI LVNSSPEKLM GLNLPFMNGF TPVSNAVLCA KASMLLQNVP 540 PAILLRFLRE HRSEWADSSI DFYAATSVKV GPYGVPGSRA GNLGGQVILP LAHSLEHEEL 600 LEVIKLENIG HSPEDAMMPR DMFLLQLCSG MDENAIGTCA ELIFAPIDAS FADDAPLLPS 660 GFRIIPLDSS KEAASPNRTL DLASALETGP AGNKTSSDST VAGGAVRSVM TIAFEFAFES 720 HMQESVASMA RQYVRSVISS VQRVAIALSP SQLGPNSSLL PPLGTPEAHT LARWICQSYR 780 CYLGLELVKA NGEGSESILK TLWHHSDAIL CCSLKALPVF TFANQAGLDM LETTFISLQD 840 ITLEKIFDDH GKKSLCSEFP QIMQQGFACL QGGICLSSMG RPVSFERAIA WKVLNDEENA 900 HCICFNFVNW SFV

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MATACKDGNS NKSAVMDNGK YVRYTPEQVE ALERLYHECP KPSSIRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF  120
RQQTPTVILK FFSLSIXXWA HSLYAIMVYL VSXFHVGLSL DSLISXSIEK VAFFFICLRG  180
HWLQKIQVCR VSAVFVVGSF SWLQNSCFVN IALXCVFVDG LWNLECFCIF SRLLSIAEET  240
LTEFLSKATG TAVEWVQMPG MKPGPDSVGI VAISHGCTGV AARACGLVGL EPTRVAEILK  300
DRPSWFRDCR AVDVMNVLPT ANGGTIELLY MQLYAPTTLA PARDFWLLRF TSVMEDGSLV  360
VCERSLSNTQ NGPSMPPVHN FVRAEMLPSG YLIRPCEGGG SIIHIVDHMN LEAWSVPEVL  420
RPLYESSAVL AQKTTMAALR HLRQIAHEVS QTNVTNWARR PAALRALSQR LSRGFNEALN  480
GLADEGWSLI GNDGMDDVTI LVNSSPEKLM GLNLPFMNGF TPVSNAVLCA KASMLLQNVP  540
PAILLRFLRE HRSEWADSSI DFYAATSVKV GPYGVPGSRA GNLGGQVILP LAHSLEHEEL  600
LEVIKLENIG HSPEDAMMPR DMFLLQLCSG MDENAIGTCA ELIFAPIDAS FADDAPLLPS  660
GFRIIPLDSS KEAASPNRTL DLASALETGP AGNKTSSDST VAGGAVRSVM TIAFEFAFES  720
HMQESVASMA RQYVRSVISS VQRVAIALSP SQLGPNSSLL PPLGTPEAHT LARWICQSYR  780
CYLGLELVKA NGEGSESILK TLWHHSDAIL CCSLKALPVF TFANQAGLDM LETTFISLQD  840
ITLEKIFDDH GKKSLCSEFP QIMQQGFACL QGGICLSSMG RPVSFERAIA WKVLNDEENA  900
HCICFNFVNW SFV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021643260.1	0.0	homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A2C9UY23	0.0	A0A2C9UY23_MANES; Uncharacterized protein
STRING	cassava4.1_001672m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]