PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_19122_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

NAC

Protein Properties

Length: 196aa MW: 22562.1 Da PI: 4.5592

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_19122_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.1	2.1e-37	8	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ e ++wyf+s+r + cra_locus_19122_iso_3_len_971_ver_3 8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLDGKAMVEGNKWYFYSRRTQ-------- 72 79***********************999.99**********977777899**9854........ PP NAM 75 nratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +r+t +gyW+ g +++++s +g++vg+kk vfy g+ ++g kt+W+m+eyrl cra_locus_19122_iso_3_len_971_ver_3 73 SRITGNGYWQPLGVEEPIFSMtSGQKVGMKKFYVFYIGEPQEGAKTNWIMQEYRL 127 799************9878999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-48	6	163	IPR003441	NAC domain
PROSITE profile	PS51005	46.369	8	164	IPR003441	NAC domain
Pfam	PF02365	1.1E-22	9	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGDDNVKLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLDGKAMVE 60 GNKWYFYSRR TQSRITGNGY WQPLGVEEPI FSMTSGQKVG MKKFYVFYIG EPQEGAKTNW 120 IMQEYRLSSD SGSTSSSSSS SRSSKKRHSK LDYSKWVVCR VYERNNDDDD DDGTELSCLD 180 EVFLSLDDLE EISLPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-40	5	166	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-40	5	166	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-40	5	166	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-40	5	166	14	167	NO APICAL MERISTEM PROTEIN
4dul_A	2e-40	5	166	14	167	NAC domain-containing protein 19
4dul_B	2e-40	5	166	14	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106335.1	1e-113	NAC domain-containing protein 104-like
Refseq	XP_027159802.1	1e-113	NAC domain-containing protein 104
Swissprot	Q8GWK6	2e-86	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A068TMB6	1e-111	A0A068TMB6_COFCA; Uncharacterized protein
STRING	XP_009762857.1	1e-106	(Nicotiana sylvestris)

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]