PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_1901_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 262aa MW: 30170.9 Da PI: 4.425 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61 | 1.8e-19 | 80 | 133 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa++k cra_locus_1901_iso_1_len_1337_ver_3 80 KKRRLTADQVQFLEKSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYK 133 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.5 | 2.8e-41 | 79 | 167 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 ekkrrl+++qv++LE+sFe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEk+y++Lk+++d+l+ cra_locus_1901_iso_1_len_1337_ver_3 79 EKKRRLTADQVQFLEKSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKTKQLEKEYDSLKSSFDKLN 152 69************************************************************************ PP HD-ZIP_I/II 75 eenerLekeveeLre 89 ++ ++L ke+e+L++ cra_locus_1901_iso_1_len_1337_ver_3 153 ADYDSLFKENEKLKN 167 *************94 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.05E-19 | 67 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.556 | 75 | 135 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-19 | 78 | 139 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 8.5E-17 | 80 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.93E-17 | 80 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-20 | 81 | 143 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.5E-6 | 106 | 115 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 110 | 133 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.5E-6 | 115 | 131 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.5E-12 | 135 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
MALLQDERLP SSCSSLEVLD SLWISNSSPP PPPPFHASRM VNFSEAEGEN SRKREKSFFP 60 QEEENSGNEN FDGYFHHPEK KRRLTADQVQ FLEKSFEVEN KLEPERKVQL AKELGLQPRQ 120 VAIWFQNRRA RYKTKQLEKE YDSLKSSFDK LNADYDSLFK ENEKLKNVXL PGIKQEDAAS 180 SAKSDVFDSD SPHCTDGNHS SNVFEAELSD FSQDEDDNLS ISLLQPSLCF PKLEDECYDE 240 LQPNSSNLGF SIEDQASWFW SY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 127 | 135 | RRARYKTKQ |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027100798.1 | 1e-117 | homeobox-leucine zipper protein HAT5-like | ||||
Refseq | XP_027153110.1 | 1e-117 | homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A1DR77 | 1e-122 | A1DR77_CATRO; DNA-binding protein | ||||
STRING | XP_009766848.1 | 4e-94 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |