PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1901_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HD-ZIP
Protein Properties Length: 262aa    MW: 30170.9 Da    PI: 4.425
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1901_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1980133356
                                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                          k++++t++q++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  cra_locus_1901_iso_1_len_1337_ver_3  80 KKRRLTADQVQFLEKSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYK 133
                                          56789************************************************9 PP

2HD-ZIP_I/II128.52.8e-4179167189
                          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalk 74 
                                          ekkrrl+++qv++LE+sFe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEk+y++Lk+++d+l+
  cra_locus_1901_iso_1_len_1337_ver_3  79 EKKRRLTADQVQFLEKSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARYKTKQLEKEYDSLKSSFDKLN 152
                                          69************************************************************************ PP

                          HD-ZIP_I/II  75 eenerLekeveeLre 89 
                                          ++ ++L ke+e+L++
  cra_locus_1901_iso_1_len_1337_ver_3 153 ADYDSLFKENEKLKN 167
                                          *************94 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.05E-1967137IPR009057Homeodomain-like
PROSITE profilePS5007117.55675135IPR001356Homeobox domain
SMARTSM003894.2E-1978139IPR001356Homeobox domain
PfamPF000468.5E-1780133IPR001356Homeobox domain
CDDcd000863.93E-1780136No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2081143IPR009057Homeodomain-like
PRINTSPR000313.5E-6106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000313.5E-6115131IPR000047Helix-turn-helix motif
PfamPF021833.5E-12135167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MALLQDERLP SSCSSLEVLD SLWISNSSPP PPPPFHASRM VNFSEAEGEN SRKREKSFFP  60
QEEENSGNEN FDGYFHHPEK KRRLTADQVQ FLEKSFEVEN KLEPERKVQL AKELGLQPRQ  120
VAIWFQNRRA RYKTKQLEKE YDSLKSSFDK LNADYDSLFK ENEKLKNVXL PGIKQEDAAS  180
SAKSDVFDSD SPHCTDGNHS SNVFEAELSD FSQDEDDNLS ISLLQPSLCF PKLEDECYDE  240
LQPNSSNLGF SIEDQASWFW SY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARYKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100798.11e-117homeobox-leucine zipper protein HAT5-like
RefseqXP_027153110.11e-117homeobox-leucine zipper protein HAT5
TrEMBLA1DR771e-122A1DR77_CATRO; DNA-binding protein
STRINGXP_009766848.14e-94(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495