PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_18990_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 147aa MW: 16596.5 Da PI: 6.8829 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34 | 5.3e-11 | 17 | 62 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ah+ + r RR+ri ++f L++l+P + K++ +++Le+A++Y+k L cra_locus_18990_iso_1_len_440_ver_3 17 AHSVAKRERRHRISERFKILQSLVPGgN------KMDTVSMLEEAIHYVKFL 62 899**********************955......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.72 | 13 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-15 | 16 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-14 | 17 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-8 | 17 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.18E-13 | 17 | 66 | No hit | No description |
SMART | SM00353 | 8.7E-12 | 19 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
XLLLECCKIL VKLSTDAHSV AKRERRHRIS ERFKILQSLV PGGNKMDTVS MLEEAIHYVK 60 FLKTQIWLHQ TIINSSSSVH PNLMAFPNGI YNQTPHDYDS MVPDDDQMGL FLHSSATNSS 120 NLSYEEINMG MAPFDAKMPY XAITTSG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015897604.2 | 6e-37 | transcription factor SPATULA | ||||
TrEMBL | A0A1J6I9B0 | 3e-34 | A0A1J6I9B0_NICAT; Transcription factor bhlh140 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11714 | 17 | 23 |