PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1884_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 332aa    MW: 36785.7 Da    PI: 6.3207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1884_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.6e-154493255
                                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                         r +h+  E+rRR++iN++f+ Lrel+P++    ++K + a+ L ++++Y++ Lq
  cra_locus_1884_iso_4_len_1455_ver_3 44 RSKHSVTEQRRRSKINERFQILRELIPHS----DQKRDTASFLLEVIQYVQFLQ 93
                                         899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.4E-2340115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1840115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0314292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-144497No hitNo description
PfamPF000102.6E-124493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-114898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MKSGKGHQEE EEEVEEEFGA KKDATASSNN PKDGKNSDKA NAIRSKHSVT EQRRRSKINE  60
RFQILRELIP HSDQKRDTAS FLLEVIQYVQ FLQEKVQKYE GSYQTWNSEP TKLMPWRNSH  120
WRMPSFVNNP PAMKNGSASG QTFPGRFDEN NITVPSTMHP SQQNPVDSDI GRDVSSKAID  180
QQTELANQTM TMAMPMQANI PAPVQTDGTF AHVQPRPASD AQSSECPSAP DALNHQDDLA  240
IEGGTISISS MYSQGLLNTL TQALQNTGLD LSQATISVQI NLGKRANRGL ATGIYVPRDQ  300
ENSVPSGNQS VGHFRDTSNG EDMNQGQKRM KI
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027151692.10.0transcription factor BIM2 isoform X2
SwissprotQ9CAA41e-106BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A068TYQ01e-180A0A068TYQ0_COFCA; Uncharacterized protein
STRINGXP_009594832.11e-149(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]