PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_1884_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 36785.7 Da PI: 6.3207 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.7 | 5.6e-15 | 44 | 93 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lrel+P++ ++K + a+ L ++++Y++ Lq cra_locus_1884_iso_1_len_1463_ver_3 44 RSKHSVTEQRRRSKINERFQILRELIPHS----DQKRDTASFLLEVIQYVQFLQ 93 899*************************9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-23 | 40 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-18 | 40 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.031 | 42 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.98E-14 | 44 | 97 | No hit | No description |
Pfam | PF00010 | 2.6E-12 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-11 | 48 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MKSGKGHQEE EEEVEEEFGA KKDATASSNN PKDGKNSDKA NAIRSKHSVT EQRRRSKINE 60 RFQILRELIP HSDQKRDTAS FLLEVIQYVQ FLQEKVQKYE GSYQTWNSEP TKLMPWRNSH 120 WRMPSFVNNP PAMKNGSASG QTFPGRFDEN NITVPSTMHP SQQNPVDSDI GRDVSSKAID 180 QQTELANQTM TMAMPMQANI PAPVQTDGTF AHVQPRPASD AQSSECPSAP DALNHQDDLA 240 IEGGTISISS MYSQGLLNTL TQALQNTGLD LSQATISVQI NLGKRANRGL ATGIYVPRDQ 300 ENSVPSGNQS VGHFRDTSNG EDMNQGQKRM KI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027151692.1 | 0.0 | transcription factor BIM2 isoform X2 | ||||
Swissprot | Q9CAA4 | 1e-106 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A068TYQ0 | 1e-180 | A0A068TYQ0_COFCA; Uncharacterized protein | ||||
STRING | XP_009594832.1 | 1e-149 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4426 | 23 | 37 |
Publications ? help Back to Top | |||
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