PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_18789_iso_9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 266aa MW: 30706.8 Da PI: 10.2965 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.7 | 1.7e-29 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRrng+lKKA+ELS+LCdaev viifsstgkly+++s cra_locus_18789_iso_9_len_1018_ver_3 2 KRIENKISRQVTFSKRRNGLLKKAKELSILCDAEVGVIIFSSTGKLYDFAS 52 79***********************************************86 PP | |||||||
2 | K-box | 77.8 | 2.8e-26 | 75 | 149 | 9 | 83 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 + +++ + +q+e+a L++++ Lq+++R+llGe+L+ Ls+k+L++Le+qLe+slk +R+kK+++l+eqi++l cra_locus_18789_iso_9_len_1018_ver_3 75 NPSSEIKFWQREVASLRQQLYYLQESHRQLLGEELSGLSVKDLENLENQLESSLKGVRTKKEQVLTEQIKDLH 147 678899******************************************************************9 PP K-box 82 kk 83 +k cra_locus_18789_iso_9_len_1018_ver_3 148 QK 149 98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.202 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.8E-31 | 2 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.1E-29 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.09E-39 | 2 | 71 | No hit | No description |
Pfam | PF00319 | 2.3E-26 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-17 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-17 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.7E-24 | 78 | 149 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.181 | 80 | 196 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
XKRIENKISR QVTFSKRRNG LLKKAKELSI LCDAEVGVII FSSTGKLYDF ASTSMRSVIE 60 RYKKMKEEHQ QHLLNPSSEI KFWQREVASL RQQLYYLQES HRQLLGEELS GLSVKDLENL 120 ENQLESSLKG VRTKKEQVLT EQIKDLHQKV FLKRKFRFKF XLSLHLHHVT SIPLQGNILH 180 QENIELYKKV NLIHQENAQL QKKVYGPGCT TEAYKSTEIA RGISNGNGLR APINLQLTLP 240 ETEKNETPVN LMKLGLKLHX QAAVLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-18 | 3 | 70 | 10 | 77 | MEF2C |
5f28_B | 5e-18 | 3 | 70 | 10 | 77 | MEF2C |
5f28_C | 5e-18 | 3 | 70 | 10 | 77 | MEF2C |
5f28_D | 5e-18 | 3 | 70 | 10 | 77 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087974.2 | 1e-112 | MADS-box transcription factor 23-like | ||||
Refseq | XP_020551897.1 | 1e-112 | MADS-box transcription factor 23-like | ||||
Refseq | XP_020551898.1 | 1e-112 | MADS-box transcription factor 23-like | ||||
Refseq | XP_020551899.1 | 1e-112 | MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 6e-82 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | Q6UGQ7 | 1e-105 | Q6UGQ7_PETHY; MADS-box protein 14 | ||||
STRING | Gorai.008G018100.1 | 1e-106 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA679 | 20 | 56 |
Publications ? help Back to Top | |||
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