PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18789_iso_6
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MIKC_MADS
Protein Properties Length: 160aa    MW: 18935.7 Da    PI: 10.5291
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18789_iso_6genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF946.8e-30252151
                                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                         krienk+ rqvtfskRrng+lKKA+ELS+LCdaev viifsstgkly+++s
  cra_locus_18789_iso_6_len_741_ver_3  2 KRIENKISRQVTFSKRRNGLLKKAKELSILCDAEVGVIIFSSTGKLYDFAS 52
                                         79***********************************************86 PP
2K-box79.86.5e-2775149983
                                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                                          + +++ + +q+e+a L++++  Lq+++R+llGe+L+ Ls+k+L++Le+qLe+slk +R+kK+++l+eqi++l +
  cra_locus_18789_iso_6_len_741_ver_3  75 NPSSEIKFWQREVASLRQQLYYLQESHRQLLGEELSGLSVKDLENLENQLESSLKGVRTKKEQVLTEQIKDLHQ 148
                                          568899******************************************************************99 PP

                                K-box  83 k 83 
                                          k
  cra_locus_18789_iso_6_len_741_ver_3 149 K 149
                                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.202154IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-31253IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-30274IPR002100Transcription factor, MADS-box
CDDcd002651.25E-38271No hitNo description
PfamPF003199.4E-27350IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-171631IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-173152IPR002100Transcription factor, MADS-box
PfamPF014865.8E-2477149IPR002487Transcription factor, K-box
PROSITE profilePS5129713.26580160IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
XKRIENKISR QVTFSKRRNG LLKKAKELSI LCDAEVGVII FSSTGKLYDF ASTSMRSVIE  60
RYKKMKEEHQ QHLLNPSSEI KFWQREVASL RQQLYYLQES HRQLLGEELS GLSVKDLENL  120
ENQLESSLKG VRTKKEQVLT EQIKDLHQKV FLKRKFRFKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-193701077MEF2C
5f28_B4e-193701077MEF2C
5f28_C4e-193701077MEF2C
5f28_D4e-193701077MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165379.13e-83PREDICTED: MADS-box transcription factor 23-like
RefseqXP_019165380.13e-83PREDICTED: MADS-box transcription factor 23-like
RefseqXP_024031735.16e-83MADS-box transcription factor 23
SwissprotQ9SZJ62e-70AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLW9SKK17e-81W9SKK1_9ROSA; MADS-box transcription factor 27
STRINGXP_010112258.11e-81(Morus notabilis)
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]