PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_18789_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 102aa MW: 12108.7 Da PI: 10.551 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.4 | 2.5e-30 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRrng+lKKA+ELS+LCdaev viifsstgkly+++s cra_locus_18789_iso_4_len_481_ver_3 2 KRIENKISRQVTFSKRRNGLLKKAKELSILCDAEVGVIIFSSTGKLYDFAS 52 79***********************************************86 PP | |||||||
2 | K-box | 13.1 | 4.1e-06 | 75 | 102 | 9 | 36 |
K-box 9 leeakaeslqqelakLkkeienLqreqR 36 + +++ + +q+e+a L++++ Lq+++R cra_locus_18789_iso_4_len_481_ver_3 75 NPSSEIKFWQREVASLRQQLYYLQESHR 102 678899********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.202 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.8E-31 | 2 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-31 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.06E-39 | 2 | 71 | No hit | No description |
Pfam | PF00319 | 3.5E-27 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-17 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 102 aa Download sequence Send to blast |
XKRIENKISR QVTFSKRRNG LLKKAKELSI LCDAEVGVII FSSTGKLYDF ASTSMRSVIE 60 RYKKMKEEHQ QHLLNPSSEI KFWQREVASL RQQLYYLQES HR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-20 | 3 | 70 | 10 | 77 | MEF2C |
5f28_B | 8e-20 | 3 | 70 | 10 | 77 | MEF2C |
5f28_C | 8e-20 | 3 | 70 | 10 | 77 | MEF2C |
5f28_D | 8e-20 | 3 | 70 | 10 | 77 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165379.1 | 1e-56 | PREDICTED: MADS-box transcription factor 23-like | ||||
Refseq | XP_019165380.1 | 1e-56 | PREDICTED: MADS-box transcription factor 23-like | ||||
Swissprot | Q9SZJ6 | 3e-49 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A2G9HJJ1 | 3e-53 | A0A2G9HJJ1_9LAMI; MADS box transcription factor | ||||
STRING | XP_004289825.1 | 6e-55 | (Fragaria vesca) |
Publications ? help Back to Top | |||
---|---|---|---|
|