PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_18789_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 240aa MW: 27513.2 Da PI: 9.9579 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93 | 1.4e-29 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRrng+lKKA+ELS+LCdaev viifsstgkly+++s cra_locus_18789_iso_3_len_940_ver_3 2 KRIENKISRQVTFSKRRNGLLKKAKELSILCDAEVGVIIFSSTGKLYDFAS 52 79***********************************************86 PP | |||||||
2 | K-box | 87.4 | 2.9e-29 | 75 | 164 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 + +++ + +q+e+a L++++ Lq+++R+llGe+L+ Ls+k+L++Le+qLe+slk +R+kK+++l+eqi++l + cra_locus_18789_iso_3_len_940_ver_3 75 NPSSEIKFWQREVASLRQQLYYLQESHRQLLGEELSGLSVKDLENLENQLESSLKGVRTKKEQVLTEQIKDLHQ 148 678899******************************************************************** PP K-box 83 kekelqeenkaLrkkl 98 k + l++en +L kk+ cra_locus_18789_iso_3_len_940_ver_3 149 KGNILHQENIELYKKV 164 *************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.202 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.8E-31 | 2 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-30 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.26E-40 | 2 | 71 | No hit | No description |
Pfam | PF00319 | 2.0E-26 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-17 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-17 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.0E-28 | 77 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.888 | 80 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
XKRIENKISR QVTFSKRRNG LLKKAKELSI LCDAEVGVII FSSTGKLYDF ASTSMRSVIE 60 RYKKMKEEHQ QHLLNPSSEI KFWQREVASL RQQLYYLQES HRQLLGEELS GLSVKDLENL 120 ENQLESSLKG VRTKKEQVLT EQIKDLHQKG NILHQENIEL YKKVNLIHQE NAQLQKKVYG 180 PGCTTEAYKS TEIARGISNG NGLRAPINLQ LTLPETEKNE TPVNLMKLGL KLHXQAAVLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-18 | 3 | 70 | 10 | 77 | MEF2C |
5f28_B | 2e-18 | 3 | 70 | 10 | 77 | MEF2C |
5f28_C | 2e-18 | 3 | 70 | 10 | 77 | MEF2C |
5f28_D | 2e-18 | 3 | 70 | 10 | 77 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087974.2 | 1e-118 | MADS-box transcription factor 23-like | ||||
Refseq | XP_020551897.1 | 1e-118 | MADS-box transcription factor 23-like | ||||
Refseq | XP_020551898.1 | 1e-118 | MADS-box transcription factor 23-like | ||||
Refseq | XP_020551899.1 | 1e-118 | MADS-box transcription factor 23-like | ||||
Swissprot | Q6EP49 | 4e-88 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A1U8LQE7 | 1e-111 | A0A1U8LQE7_GOSHI; MADS-box transcription factor 23-like isoform X1 | ||||
TrEMBL | Q6UGQ7 | 1e-112 | Q6UGQ7_PETHY; MADS-box protein 14 | ||||
STRING | Gorai.008G018100.1 | 1e-112 | (Gossypium raimondii) |
Publications ? help Back to Top | |||
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