PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_18737_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | bHLH | ||||||||
Protein Properties | Length: 208aa MW: 23579.8 Da PI: 4.484 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.5e-08 | 171 | 196 | 6 | 30 |
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 ++ErrRR+r+N++++ Lr+++Pk + cra_locus_18737_iso_2_len_654_ver_3 171 LMAERRRRKRLNDRLSMLRSIVPKiS 196 589********************955 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.439 | 165 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-8 | 167 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-6 | 171 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-7 | 172 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MELTTENGIL EELLVASKGD NWTTLLGGSN GGNELYEIFP NGWNYESCFD QNQEDLTLTS 60 SNFSSLLGYN NNTSISQSFA FPFGEPYPFS DGNFTIPEFD YNDMPQEAGI QVQEEYDHEG 120 IHLQENGQLF GLVGNGLEQL EQQHVNSRTD AFTEKKSSKV KKVEGQPSKN LMAERRRRKR 180 LNDRLSMLRS IVPKISKFXQ MDRTSILG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 173 | 180 | ERRRRKRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027083232.1 | 8e-35 | transcription factor bHLH61-like | ||||
Refseq | XP_027178936.1 | 8e-35 | transcription factor bHLH61 | ||||
TrEMBL | A0A068U2H5 | 3e-33 | A0A068U2H5_COFCA; Uncharacterized protein | ||||
STRING | EOX91851 | 7e-33 | (Theobroma cacao) |