PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18719_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GRAS

Protein Properties

Length: 313aa MW: 35478.4 Da PI: 8.0009

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18719_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	184.1	1e-56	115	300	189	374
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 + + + +vk++E++aVn+++qlh++l +s+ +++L l++s++P +v ++eqea+hn++s+ +r++++l cra_locus_18719_iso_2_len_1485_ver_3 115 VPFGDVHVKEKECVAVNCIFQLHKMLYDSTGGVL--RDFLGLIRSTNPSIVLMAEQEAEHNETSLDTRLSNSL 185 5567789*****************77766655..89******************************* PP GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 +yysa+fds++a++p++s r k+E++ +rei+n++aceg+er erh++++kW++++ee G++ ++++e++ cra_locus_18719_iso_2_len_1485_ver_3 186 KYYSAIFDSIDASIPPDSPIRPKIEEM-YAREIRNIIACEGRERYERHQSFGKWKKMMEEGGLRCMEIQEREL 257 ***********************.89*************************************** PP GRAS 335 kqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 q ++ll++++++ y+v+ e+ ++++l W d+pL++v aW+ cra_locus_18719_iso_2_len_1485_ver_3 258 LQSQMLLKMYNGKHYKVDkqgEDGAAITLSWLDQPLYTVAAWE 300 *******9995544455566************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	20.179	1	277	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-54	115	300	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MLAGCSSSLL SPRHRLRSES PAQFQACHFP SMSTQRLDLP CFPRKDTPRT QPIRPVGVSV 60 ERPIEAKTSS CSIKQNIRLP PSATAAQSAF LEGRRESKDD FWGKNRSLKR FADQVPFGDV 120 HVKEKECVAV NCIFQLHKML YDSTGGVLRD FLGLIRSTNP SIVLMAEQEA EHNETSLDTR 180 LSNSLKYYSA IFDSIDASIP PDSPIRPKIE EMYAREIRNI IACEGRERYE RHQSFGKWKK 240 MMEEGGLRCM EIQERELLQS QMLLKMYNGK HYKVDKQGED GAAITLSWLD QPLYTVAAWE 300 SVDVAGSSSQ RAD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-23	119	299	194	374	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027080070.1	1e-102	scarecrow-like protein 28
Refseq	XP_027083311.1	1e-102	scarecrow-like protein 28
Refseq	XP_027180274.1	1e-102	scarecrow-like protein 28
Swissprot	Q9CAN3	1e-65	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A068UNJ1	1e-101	A0A068UNJ1_COFCA; Uncharacterized protein
STRING	POPTR_0003s12240.1	9e-98	(Populus trichocarpa)