PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18719_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 682aa    MW: 76255.7 Da    PI: 6.1289
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18719_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4125.4e-1263026691374
                                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 
                                           l++lL++c+ea+ s++   +++++arl +lasp+g+++ Rl+ay++eALa r+ar +++++++ pp+e + + 
  cra_locus_18719_iso_1_len_2591_ver_3 302 LISLLVACVEAIGSKNIPGIHQFIARLGDLASPRGSTISRLTAYYAEALALRVARLWPHIFHISPPRELD-RI 373
                                           5799**************************************************************9998.56 PP

                                  GRAS  74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTg 146
                                            +++ +al+l+++vsPil+f h+t N+ +++a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg
  cra_locus_18719_iso_1_len_2591_ver_3 374 DDDSGTALRLLNQVSPILRFVHFTSNEILVRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITG 446
                                           78888999***************************************************************** PP

                                  GRAS 147 vgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219
                                           +g+    sk+el etg+rLa fAe+l++pfef++ v++rled++l++L+vk++E++aVn+++qlh++l +s+ 
  cra_locus_18719_iso_1_len_2591_ver_3 447 IGE----SKQELIETGDRLAGFAEALNLPFEFHP-VVDRLEDVRLWMLHVKEKECVAVNCIFQLHKMLYDSTG 514
                                           ***....***************************.7********************************77766 PP

                                  GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                                                +++L l++s++P +v ++eqea+hn++s+ +r++++l+yysa+fds++a++p++s  r k+E++  +r
  cra_locus_18719_iso_1_len_2591_ver_3 515 GVL--RDFLGLIRSTNPSIVLMAEQEAEHNETSLDTRLSNSLKYYSAIFDSIDASIPPDSPIRPKIEEM-YAR 584
                                           655..89**************************************************************.89* PP

                                  GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgW 362
                                           ei+n++aceg+er erh++++kW++++ee G++ ++++e++  q ++ll++++++ y+v+   e+ ++++l W
  cra_locus_18719_iso_1_len_2591_ver_3 585 EIRNIIACEGRERYERHQSFGKWKKMMEEGGLRCMEIQERELLQSQMLLKMYNGKHYKVDkqgEDGAAITLSW 657
                                           *****************************************************999****5544455566*** PP

                                  GRAS 363 kdrpLvsvSaWr 374
                                            d+pL++v aW+
  cra_locus_18719_iso_1_len_2591_ver_3 658 LDQPLYTVAAWE 669
                                           ***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.671276646IPR005202Transcription factor GRAS
PfamPF035141.9E-123302669IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MLAGCSSSLL SPRHRLRSES PAQFQACHFP SMSTQRLDLP CFPRKDTPRT QPIRPVGVSV  60
ERPIEAKTSS CSIKQNIRLP PSATAAQSAF LEGRRESKDD FWGKNRSLKR FADQVPFGDD  120
DDDDEDXTCM SRAKRKRGNG KFDDSPEDEK KPSLSHLGSG NFWLQQGLDV ARSLPLITGL  180
DAPQVPFSLS CSGEEERVCF VPSDLISPPL PFSNNPWVES VVTEITNLGD KKAETSQGPA  240
KEASGSSTSS ENHGLVLRLN ENPTEHEIGN GSSRPPNPTR NTQVVSGHNG NNNRSEHDDF  300
ELISLLVACV EAIGSKNIPG IHQFIARLGD LASPRGSTIS RLTAYYAEAL ALRVARLWPH  360
IFHISPPREL DRIDDDSGTA LRLLNQVSPI LRFVHFTSNE ILVRAFEGKD RVHIIDFDIK  420
QGLQWPSLFQ SLASRTNPPS HVRITGIGES KQELIETGDR LAGFAEALNL PFEFHPVVDR  480
LEDVRLWMLH VKEKECVAVN CIFQLHKMLY DSTGGVLRDF LGLIRSTNPS IVLMAEQEAE  540
HNETSLDTRL SNSLKYYSAI FDSIDASIPP DSPIRPKIEE MYAREIRNII ACEGRERYER  600
HQSFGKWKKM MEEGGLRCME IQERELLQSQ MLLKMYNGKH YKVDKQGEDG AAITLSWLDQ  660
PLYTVAAWES VDVAGSSSQR AD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6630966826378Protein SCARECROW
5b3h_A1e-6630966825377Protein SCARECROW
5b3h_D1e-6630966825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027080070.10.0scarecrow-like protein 28
RefseqXP_027083311.10.0scarecrow-like protein 28
RefseqXP_027180274.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A068UNJ10.0A0A068UNJ1_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000078790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434