PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18564_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family GRAS
Protein Properties Length: 742aa    MW: 80386.7 Da    PI: 6.5093
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18564_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.32.2e-1263887422373
                                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekns 74 
                                            +lLl+cAeav+s++le+a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp+ + s    
  cra_locus_18564_iso_1_len_2620_ver_3 388 LTLLLQCAEAVASDNLEEANNMLLEISQLSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPTVPHS---- 456
                                           579*************************************************************99996.... PP

                                  GRAS  75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgv 147
                                           ++ ++a+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+
  cra_locus_18564_iso_1_len_2620_ver_3 457 QKMASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGL 529
                                           89999******************************************************************** PP

                                  GRAS 148 gspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsl 220
                                           g     s e+le+tg+rL++fA++lg+pfefn+ va+++ +l++++L+v+++Ea+aV++    h l+d ++s 
  cra_locus_18564_iso_1_len_2620_ver_3 530 GT----SIEALEATGKRLTDFADKLGLPFEFNP-VADKVGNLDPDKLKVSKREAVAVHWLQ--HCLYDVTGSD 595
                                           **....9**************************.7*************************9..8899888988 PP

                                  GRAS 221 eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                                           ++    +L+l+++lsPkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE++ll+re
  cra_locus_18564_iso_1_len_2620_ver_3 596 TN----TLWLLQRLSPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSRE 663
                                           88....**********************.899***************************************** PP

                                  GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                                           i+nv+a  g +r  + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+l lgW+d  
  cra_locus_18564_iso_1_len_2620_ver_3 664 IRNVLAVGGPSRSGEIK-FSNWREKLQQSGFKGISLAGNAAAQATLLLGMFPSDGYTLIEDNGTLKLGWRDLC 735
                                           ***********888776.******************************************************* PP

                                  GRAS 367 LvsvSaW 373
                                           L+++SaW
  cra_locus_18564_iso_1_len_2620_ver_3 736 LLTASAW 742
                                           ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.842361723IPR005202Transcription factor GRAS
PfamPF035147.7E-124388742IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MAKAFGLFKT TDVNCWNKED LRLLLHSDKA NNKMVRKRAA SEMDLQTGGA GEFHRLLRRT  60
FTTGPPASNI PPPAPPAPVG AHDFVVCSNN PNLPNPNYST TTVPALPSST NLSVTSAGSA  120
SDSAFSSLSH HQINRQGLIQ SQTPSVCVFS GLPLFPPDRN HPSSVAAGSL LAPPFTPLSN  180
PNSTSVVNGV ISMDQDSSAT TAWIDNFIKD LIHSSTHVSI PQLIQNVREI IYPCNPNLAS  240
IVEYRLRSLS GTDYTSGGRT RKALAQQDHE SHPQLVQVGT SESPNQYVNW GFTLPKATTT  300
NAAEISRSDP VSGSGFSFVT SAAAPLPACS PSQVQHPNHN QPEEAPEQPR KESPPPPPSS  360
TAVAPAVVTE KKDEIMKKKR DEDGLHLLTL LLQCAEAVAS DNLEEANNML LEISQLSTPF  420
GTSAQRVAAY FSEAMSARLV SSCLGIYASL PTVPHSQKMA SAFQVFNGIS PFVKFSHFTA  480
NQAIQEAFER EERVHIIDLD IMQGLQWPGL FHILASRPGG PPFVRLTGLG TSIEALEATG  540
KRLTDFADKL GLPFEFNPVA DKVGNLDPDK LKVSKREAVA VHWLQHCLYD VTGSDTNTLW  600
LLQRLSPKVV TVVEQDLSHA GSFLGRFVEA IHYYSALFDS LGACYGEESE ERHVVEQQLL  660
SREIRNVLAV GGPSRSGEIK FSNWREKLQQ SGFKGISLAG NAAAQATLLL GMFPSDGYTL  720
IEDNGTLKLG WRDLCLLTAS AW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03717423378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022893717.10.0protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2G9G7V00.0A0A2G9G7V0_9LAMI; Uncharacterized protein
STRINGSolyc10g074680.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430