PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_18534_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | SRS | ||||||||
Protein Properties | Length: 223aa MW: 23798.3 Da PI: 8.8966 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 200.3 | 6e-62 | 2 | 139 | 17 | 155 |
DUF702 17 kdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalss 88 kdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqq+ a+ss +++++ + ++skr+re + s+l++ cra_locus_18534_iso_1_len_693_ver_3 2 KDCTHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQQLASSSLQQNQQhlRGENSKRPRE----NPSSLAC 71 9***********************************777655554444333247777888886....599**** PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGleek 155 t+l++++s e+ ++P+evss+avfrcvrvs++d+ +e+++aYqtav+igGhvfkGiLydqGl+++ cra_locus_18534_iso_1_len_693_ver_3 72 TRLPTSSSGLEMVGGQFPAEVSSAAVFRCVRVSAMDEaEEQQYAYQTAVNIGGHVFKGILYDQGLDHQ 139 *************************************55667***********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01623 | 7.0E-19 | 2 | 34 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 9.3E-57 | 2 | 137 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 7.9E-29 | 87 | 136 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
XKDCTHLRCR TCCKSRGFQC QTHVKSTWVP AAKRRERQQQ QLASSSLQQN QQHLRGENSK 60 RPRENPSSLA CTRLPTSSSG LEMVGGQFPA EVSSAAVFRC VRVSAMDEAE EQQYAYQTAV 120 NIGGHVFKGI LYDQGLDHQT TTAGRYSTAT TGVGGNTSSG GGTDGGGGVH PPQPPPLNLI 180 GTTSSAPTAA TAGITMHMLD HSIYPTPLSA FMAGTQFFPP PRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027090043.1 | 5e-80 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9SD40 | 5e-62 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A1DR76 | 1e-162 | A1DR76_CATRO; DNA-binding protein | ||||
STRING | XP_010105273.1 | 1e-74 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA678 | 24 | 110 |
Publications ? help Back to Top | |||
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