PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1842_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 179aa MW: 20549.9 Da PI: 6.0127

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1842_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	28.2	3.8e-09	37	57	27	47
RWP-RK 27 vclTvLKriCRqyGIkRWPhR 47 v+ ++LKriCR+ GI RWP cra_locus_1842_iso_2_len_784_ver_3 37 VSRSTLKRICRKCGIFRWPPS 57 8999***************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	10.319	1	84	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-7	37	58	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-10	122	179	No hit	No description
PROSITE profile	PS51745	13.95	128	179	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.4E-10	129	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
ETAPEDDKSF XPCSLXCLVL YFSLFNILVT ETFSTAVSRS TLKRICRKCG IFRWPPSKAR 60 RHNNQEFVQA TRGTIEESSQ MQQQPISDVV SVEPRQERDP LKSQVENVST SQMQTTTEAK 120 VVQEDDRSIM VKVTCKDDII KFRLLVSARK VDLEQEVAMR LNLTVGSFKI KYLDEDGDW