PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_1842_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 371aa MW: 41641.8 Da PI: 5.6544

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_1842_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	44.2	3.7e-14	206	249	4	47
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 is e+l+++ +++++d+A Lgv+ ++LKriCR+ GI RWP cra_locus_1842_iso_1_len_1728_ver_3 206 GISREVLEQHSAKKLEDVAVVLGVSRSTLKRICRKCGIFRWPPS 249 6999**************************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.48	188	276	IPR003035	RWP-RK domain
Pfam	PF02042	6.9E-13	207	250	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.13E-9	315	371	No hit	No description
PROSITE profile	PS51745	13.95	320	371	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-9	321	371	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MASDSEQVKQ RDEVIQESKE EPATSSEVTQ PARSFEENSI CYKTVSRVKE NNIKQLVAEV 60 EGFADVSERA SEKLGNCGRN IDQDFPAETV VNCCGEQNIG AISRPRSETS LFGARIGSSE 120 VHRVIQPDSS SQQTIKEMAI AKRKIGARIP PWIGASEIAW QARQQPQKSV MQVDEVNKEQ 180 VVSGESDEAA GSRRQAKVRT LDTEYGISRE VLEQHSAKKL EDVAVVLGVS RSTLKRICRK 240 CGIFRWPPSK ARRHNNQEFV QATRGTIEES SQMQQQPISD VVSVEPRQER DPLKSQVENV 300 STSQMQTTTE AKVVQEDDRS IMVKVTCKDD IIKFRLLVSA RKVDLEQEVA MRLNLTVGSF 360 KIKYLDEDGD W

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MASDSEQVKQ RDEVIQESKE EPATSSEVTQ PARSFEENSI CYKTVSRVKE NNIKQLVAEV  60
EGFADVSERA SEKLGNCGRN IDQDFPAETV VNCCGEQNIG AISRPRSETS LFGARIGSSE  120
VHRVIQPDSS SQQTIKEMAI AKRKIGARIP PWIGASEIAW QARQQPQKSV MQVDEVNKEQ  180
VVSGESDEAA GSRRQAKVRT LDTEYGISRE VLEQHSAKKL EDVAVVLGVS RSTLKRICRK  240
CGIFRWPPSK ARRHNNQEFV QATRGTIEES SQMQQQPISD VVSVEPRQER DPLKSQVENV  300
STSQMQTTTE AKVVQEDDRS IMVKVTCKDD IIKFRLLVSA RKVDLEQEVA MRLNLTVGSF  360
KIKYLDEDGD W

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26