PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18400_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 646aa    MW: 72855 Da    PI: 6.4636
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18400_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.2e-07364385426
                                           ---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                           +lCrff   G C++G++C ++H+
  cra_locus_18400_iso_4_len_2414_ver_3 364 SLCRFFVN-GLCNRGSQCLYSHS 385
                                           59**5555.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525402.66E-6390IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5010314.098360387IPR000571Zinc finger, CCCH-type
SMARTSM003560.0056361386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6363385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4364390IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4364385IPR000571Zinc finger, CCCH-type
SMARTSM003560.043388414IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788388415IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7392415IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003676Molecular Functionnucleic acid binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
XAEQRKGRTG RTCDGNVYRL VTGPFFNQLE DYEPPAILRL SLRQQILLLC CAESKAINDP  60
KVLLQKALDP PHPEVIDEAL NLLVQMSAIE KTSPRGRYEP TFHGRLLSSF TLSFDASILI  120
LKFGDMGMLR EGILVGILMD MQPLPIMRPF GQENLYVEYT SNFYTEDNKS PVLLGKNEVL  180
YIGNLCAFQF WQQVFKDQYR LELLKQLLIP EGIEDTNQLL PKMEEEWCSL HNLVQSALNQ  240
VALTYDEIIH TLHRFRPKCL VASDTVPSYN EAYEFKHMCS FDYEQNGDAD SQLGNDDHLE  300
LGAGVRKCSS IPFVSSNNSR ATEVAKKLAV IVKEMRVHDK KVVYGNQSSH TTTGHNVEAA  360
GDASLCRFFV NGLCNRGSQC LYSHSIHAKR PPCKFFFSLQ GCRNGDSCFF SHDWTPSPLS  420
SSNANLCVPE DADADAESLL RLFPASPDRC ILLLDDTNFH FSSHLALHYD PSSIIATTSL  480
PTGSTSNPSL TGVKILWGLT HPHQTILSKA GKKHVPWNKV KCVLWFPQLG NEFLEVHKVY  540
VKTFFEYLAV RMLGDGLSEM QVIITLNNTC FSQLQVEKLA RESFFFLRES FPYDEASFGS  600
LSDQCNSRKP MAISKPISYV FYLRPPSSIE FDDFKAVLNG LLVHTC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027117556.10.0DExH-box ATP-dependent RNA helicase DExH8-like
TrEMBLA0A068VBS80.0A0A068VBS8_COFCA; Uncharacterized protein
STRINGXP_008235089.10.0(Prunus mume)