PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_18400_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 683aa    MW: 77118.2 Da    PI: 6.4625
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_18400_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.6e-07401422426
                                           ---SGGGGTS--TTTTT-SS-SS CS
                               zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                           +lCrff   G C++G++C ++H+
  cra_locus_18400_iso_2_len_2274_ver_3 401 SLCRFFVN-GLCNRGSQCLYSHS 422
                                           59**5555.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525406.82E-737127IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5010314.098397424IPR000571Zinc finger, CCCH-type
SMARTSM003560.0056398423IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6400422IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4401427IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4401422IPR000571Zinc finger, CCCH-type
SMARTSM003560.043425451IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788425452IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7429452IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003676Molecular Functionnucleic acid binding
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
XLCGFLNLKY ELDCLPSFLP PYFIAVCFKL LLKEFPGQAE QRKGRTGRTC DGNVYRLVTG  60
PFFNQLEDYE PPAILRLSLR QQILLLCCAE SKAINDPKVL LQKALDPPHP EVIDEALNLL  120
VQMSAIEKTS PRGRYEPTFH GRLLSSFTLS FDASILILKF GDMGMLREGI LVGILMDMQP  180
LPIMRPFGQE NLYVEYTSNF YTEDNKSPVL LGKNEVLYIG NLCAFQFWQQ VFKDQYRLEL  240
LKQLLIPEGI EDTNQLLPKM EEEWCSLHNL VQSALNQVAL TYDEIIHTLH RFRPKCLVAS  300
DTVPSYNEAY EFKHMCSFDY EQNGDADSQL GNDDHLELGA GVRKCSSIPF VSSNNSRATE  360
VAKKLAVIVK EMRVHDKKVV YGNQSSHTTT GHNVEAAGDA SLCRFFVNGL CNRGSQCLYS  420
HSIHAKRPPC KFFFSLQGCR NGDSCFFSHD WTPSPLSSSN ANLCVPEDAD ADAESLLRLF  480
PASPDRCILL LDDTNFHFSS HLALHYDPSS IIATTSLPTG STSNPSLTGV KILWGLTHPH  540
QTILSKAGKK HVPWNKVKCV LWFPQLGNEF LEVHKVYVKT FFEYLAVRML GDGLSEMQVI  600
ITLNNTCFSQ LQVEKLARES FFFLRESFPY DEASFGSLSD QCNSRKPMAI SKPISYVFYL  660
RPPSSIEFDD FKAVLNGLLV HTC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027117556.10.0DExH-box ATP-dependent RNA helicase DExH8-like
TrEMBLA0A068VBS80.0A0A068VBS8_COFCA; Uncharacterized protein
STRINGMigut.B01151.1.p0.0(Erythranthe guttata)