PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_183_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB
Protein Properties Length: 329aa    MW: 35574.2 Da    PI: 7.8372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_183_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.5e-111154445
                                        S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
                     Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                                        W+ e d+ + +a + ++ +   +W++Ia+ ++ g++l+++k+++ 
  cra_locus_183_iso_4_len_1738_ver_3 11 WSREQDKAFENALATYPEDtadRWEKIAADVP-GKSLEEIKHHYE 54
                                        ********************************.**********96 PP
2Myb_DNA-binding41.82.5e-13121165347
                                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                         +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  cra_locus_183_iso_4_len_1738_ver_3 121 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                                         6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.782666IPR017884SANT domain
SMARTSM007173.7E-8759IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-11965IPR009057Homeodomain-like
PfamPF002492.0E-81154IPR001005SANT/Myb domain
CDDcd001674.25E-91157No hitNo description
Gene3DG3DSA:1.10.10.601.9E-41154IPR009057Homeodomain-like
PROSITE profilePS5129417.581113170IPR017930Myb domain
SuperFamilySSF466891.5E-16116171IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-17118168IPR006447Myb domain, plants
SMARTSM007173.2E-10118168IPR001005SANT/Myb domain
CDDcd001671.11E-9121166No hitNo description
PfamPF002493.1E-11121165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10121164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTADESISSM WSREQDKAFE NALATYPEDT ADRWEKIAAD VPGKSLEEIK HHYELLVDDV  60
SRIESGTVPL PCYTTASDGS SSHAGDEGSG KKGGNFGHFN SDSNHGGKAS RSDQERRKGI  120
AWTEDEHRLF LLGLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  180
IHDITSVNTG DVSVPQGPIT GQTNGSAAGV SAVKSNKPPP QATAAAPGVG MYGTTIGQPV  240
GGPLVSAVGT PVNLPQQAHM AYHAPIPGPV VPGAPMNMGP MTYPMPHTSA HRXSMQQMRT  300
SARAYWCXLT YLIDLSKKIS DETVSFHLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1711751175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027097519.10.0transcription factor SRM1-like
SwissprotQ9FNN61e-124SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A068VFI40.0A0A068VFI4_COFCA; Uncharacterized protein
STRINGcassava4.1_012921m1e-166(Manihot esculenta)
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]