PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18283_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

FAR1

Protein Properties

Length: 894aa MW: 102231 Da PI: 7.4953

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18283_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.4	5e-28	137	224	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e++ + ++r+ ++++t+Cka+++vk++kd cra_locus_18283_iso_5_len_3321_ver_3 137 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDGT---SSRRASVKKTDCKASMHVKRKKD 206 5**************************************999888...8889999************ PP FAR1 74 gkwevtkleleHnHelap 91 gkw+v+++ +eHnHel p cra_locus_18283_iso_5_len_3321_ver_3 207 GKWYVHEFIKEHNHELLP 224 *************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-26	137	224	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.8E-26	342	435	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.99	622	658	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.9E-7	624	657	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.3E-9	633	660	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence Send to blast
XNLLTTDXSG RGPILHPPLS TCVAADHFYA QTVVICSATV DLRAKRNCFC DILQPGHFVF 60 CRKGISEGSS EMHLGAWCGE EVXIAVVMIG NMVDVVDHAR DRNARHSPQR DMVGTSGDTE 120 FEPHDGIEFE SHEAAYSFYQ EYAKSMGFTT SIKNSRRSKK SKEFIDAKFA CSRYGVTPES 180 DGTSSRRASV KKTDCKASMH VKRKKDGKWY VHEFIKEHNH ELLPALAYHF RIHRNVKLAE 240 KNNIDILHAV SERTRKMYVE MSRQSGGNPD IDFLRNSFKH EGRQCLTLEE GDAQVMLEYF 300 MHVQRENPYF FYAMDLNEDQ RLRNLFWVDA KSRKDYNSFS DVILFDTSYI KSNEKMPFAP 360 FVGVNNHSQP MLLGCALIAD ESTSTIVWLM KTWLRAMGGQ PPKVIITDQG KTLRAAIAEI 420 FPQSRHCYAL WHILEKVPEI LAHVIKQHET FLGKLHKCIF KSLNDEDFDM RWWKMIGRFE 480 LQENEWVHSL YEDRKKWVPA FTKDAFLAGL STNQRSDSVT SFFDKYIHKK ISLKEFVRQY 540 GTILQNRYEE EAIADFDTWH KQPALKSPSP WEKQMSAIYT HAIFKKFQVE VLGVVGCHPK 600 KESVSGTDIS FRVDDCEKGE NFIVTWNEEA LNVSCSCLMF ESKGFLCRHA LIVLQMCGLS 660 SIPSQYILKR WTKDAKNRPT ILDGTERNQT RVQRYNDICR RAIELGEEGS LSEESYNIAF 720 RALVEGLKNC VDVNNKSAVE CSSNPVGLRD VEEDNQDIHS KSSKKKSTNK KRRVQPDSEA 780 AIVEVQGSLH PMENLNSDTM TLNGYYGTQQ NVPGLIQLNL MEPPREGYYV NQQNMQGLGQ 840 LSSIAPSHDG FYATPQSIPA LGHLDFRPPS FTYSLQVVKF IGISYFNSLS LITF

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence Send to blast

XNLLTTDXSG RGPILHPPLS TCVAADHFYA QTVVICSATV DLRAKRNCFC DILQPGHFVF  60
CRKGISEGSS EMHLGAWCGE EVXIAVVMIG NMVDVVDHAR DRNARHSPQR DMVGTSGDTE  120
FEPHDGIEFE SHEAAYSFYQ EYAKSMGFTT SIKNSRRSKK SKEFIDAKFA CSRYGVTPES  180
DGTSSRRASV KKTDCKASMH VKRKKDGKWY VHEFIKEHNH ELLPALAYHF RIHRNVKLAE  240
KNNIDILHAV SERTRKMYVE MSRQSGGNPD IDFLRNSFKH EGRQCLTLEE GDAQVMLEYF  300
MHVQRENPYF FYAMDLNEDQ RLRNLFWVDA KSRKDYNSFS DVILFDTSYI KSNEKMPFAP  360
FVGVNNHSQP MLLGCALIAD ESTSTIVWLM KTWLRAMGGQ PPKVIITDQG KTLRAAIAEI  420
FPQSRHCYAL WHILEKVPEI LAHVIKQHET FLGKLHKCIF KSLNDEDFDM RWWKMIGRFE  480
LQENEWVHSL YEDRKKWVPA FTKDAFLAGL STNQRSDSVT SFFDKYIHKK ISLKEFVRQY  540
GTILQNRYEE EAIADFDTWH KQPALKSPSP WEKQMSAIYT HAIFKKFQVE VLGVVGCHPK  600
KESVSGTDIS FRVDDCEKGE NFIVTWNEEA LNVSCSCLMF ESKGFLCRHA LIVLQMCGLS  660
SIPSQYILKR WTKDAKNRPT ILDGTERNQT RVQRYNDICR RAIELGEEGS LSEESYNIAF  720
RALVEGLKNC VDVNNKSAVE CSSNPVGLRD VEEDNQDIHS KSSKKKSTNK KRRVQPDSEA  780
AIVEVQGSLH PMENLNSDTM TLNGYYGTQQ NVPGLIQLNL MEPPREGYYV NQQNMQGLGQ  840
LSSIAPSHDG FYATPQSIPA LGHLDFRPPS FTYSLQVVKF IGISYFNSLS LITF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027171325.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1S4C3S0	0.0	A0A1S4C3S0_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
TrEMBL	A0A1U7VQ31	0.0	A0A1U7VQ31_NICSY; protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
STRING	XP_009767065.1	0.0	(Nicotiana sylvestris)

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]