PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_18129_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ERF

Protein Properties

Length: 339aa MW: 38213.5 Da PI: 5.0431

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_18129_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.4	4.9e-20	210	260	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +g r++lg+f+ta eAaka+++a+ +++g cra_locus_18129_iso_1_len_1165_ver_3 210 HYRGVRRRP-WGKFAAEIRDPKRRG--SRVWLGTFDTAIEAAKAYDRAAFRMRG 260 8******.******96554..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.9E-32	209	269	IPR001471	AP2/ERF domain
CDD	cd00018	1.34E-30	209	268	No hit	No description
SMART	SM00380	1.1E-36	210	274	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.03E-22	210	269	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.263	210	268	IPR001471	AP2/ERF domain
Pfam	PF00847	2.3E-14	210	260	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.6E-13	211	222	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.6E-13	250	270	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010200	Biological Process	response to chitin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
XETPFEILAL EQIREHLLGE FSPSELFFSA AMNNNDCQSS STTTTSFSSN GAVSNCSDSS 60 YSSQSSSYRS DHHSSSINIY DSLPSRNHEL NDNTQSSFFD FALNTIDFEQ NQRNSSSRSG 120 LAVIDFSQNC NKKFKLESQD SFSSSSSIDF SSEFETKPEI IDLRDGNLPL QTNLPPLKKT 180 FKWIGFSEST QSNHDLTRSP QPKVVGEEKH YRGVRRRPWG KFAAEIRDPK RRGSRVWLGT 240 FDTAIEAAKA YDRAAFRMRG SKAILNFPLE AGKNASDDQS RAAEKKRRRE EDDEVETVVN 300 SETAPSAPNL TPAVDWNPFW EQNIDGIFNL FDDTRLTVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-30	209	269	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00549	DAP	Transfer from AT5G47230	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027084196.1	6e-68	ethylene-responsive transcription factor 6-like
Refseq	XP_027100852.1	6e-68	ethylene-responsive transcription factor 6-like
Swissprot	O80341	1e-41	EF102_ARATH; Ethylene-responsive transcription factor 5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA963	23	89

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]