PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_17900_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 323aa MW: 36308.2 Da PI: 8.3205

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_17900_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.5	2.6e-06	155	174	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ cra_locus_17900_iso_2_len_1101_ver_3 155 FSCPVCYKTFNRYNNLQMHM 174 89*****************9 PP
2	zf-C2H2	14.8	8.4e-05	239	261	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k+F k + ++H +++ cra_locus_17900_iso_2_len_1101_ver_3 239 FVCRKCSKPFAVKGDWRTHEKNC 261 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.2E-5	155	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.09E-8	155	177	No hit	No description
PROSITE profile	PS50157	10.263	155	182	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.25	155	177	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	157	177	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.09E-8	234	259	No hit	No description
SMART	SM00355	88	239	259	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
XQYPPHHQYS KSLIPSPNSP PLREALPLLH NLSLKTSSCS RDQNDQLISP CINNNNAMEL 60 DDDDEKKRSK SESSSSTTDD CVTVALHIGL PRSSPTTTTS SSSSSRINSA SSRELKEQSG 120 DLVSAGGLPL NSLNYIKGQY WIPTPSQILM GPTQFSCPVC YKTFNRYNNL QMHMWGHGSQ 180 YRKGPESLRG TQPTAMLKLP CYCCAQGCKH NIDHPRAKPL KDFXNPSNNY KRKHGTKPFV 240 CRKCSKPFAV KGDWRTHEKN CGKIWYCICG SDFKHKRSLK DHIRAFGSGH GAFEIQIYEE 300 DQEEEDYESA SEVDQDRPIS PVL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023907401.1	1e-127	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-109	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1U7Z1K6	1e-124	A0A1U7Z1K6_NELNU; zinc finger protein WIP2-like
STRING	XP_010246927.1	1e-124	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]