PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17679_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 154aa    MW: 17186.1 Da    PI: 10.783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17679_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-202777255
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  cra_locus_17679_iso_3_len_681_ver_3 27 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 77
                                         8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-322685IPR001471AP2/ERF domain
CDDcd000186.06E-292685No hitNo description
PfamPF008474.0E-142777IPR001471AP2/ERF domain
SMARTSM003805.0E-382791IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-242787IPR016177DNA-binding domain
PROSITE profilePS5103224.542785IPR001471AP2/ERF domain
PRINTSPR003673.1E-112839IPR001471AP2/ERF domain
PRINTSPR003673.1E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
XAAPPPQNEI KITSPEVKVV AEPKGKHYRG VRRRPWGKFA AEIRDPAKNG ARVWLGTFET  60
AEDAALAYDR AAYRMRGSRA LLNFPLRINS GEPEPVRITS KRSNSNSNSS TSSPSNSPSL  120
KRKKAIKVAE PPVLVVEQDT EHRGYGEQRL FSEW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-442492270ATERF1
3gcc_A4e-442492270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00548DAPTransfer from AT5G47220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549934.12e-54ethylene-responsive transcription factor 1A
RefseqXP_006368978.12e-54ethylene-responsive transcription factor 2
RefseqXP_028208223.12e-54ethylene-responsive transcription factor 1A-like
SwissprotO803378e-49EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A068UQX41e-53A0A068UQX4_COFCA; Uncharacterized protein
STRINGPOPTR_0001s15390.18e-54(Populus trichocarpa)
STRINGGLYMA17G15480.16e-54(Glycine max)
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]