PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_17664_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 239aa MW: 27000.3 Da PI: 5.1558 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 190.5 | 1.1e-58 | 7 | 235 | 138 | 374 |
GRAS 138 gppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlh 211 + +l+iT+vg sk ++eetg+ L++fA++++++++f++ v+++l+dl+ + ++v+ +E++aV + l+l+ cra_locus_17664_iso_1_len_727_ver_3 7 PLEMLKITAVGT----SKAMMEETGKWLSSFARTMNLTLSFKI-VVSDLKDLKQDLFEVEADETVAVYFGLRLF 75 4458********....9*************************9.7999************************** PP GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 ++l + +++ ++v+ ++k+l+P +v+ve ea++ns+ Flerf+eal y+sa+fd+ e l+++++ r+ cra_locus_17664_iso_1_len_727_ver_3 76 TVL----PWPNHLEAVIGVIKHLKPCAIVMVELEANLNSPVFLERFTEALCYFSAVFDCAEGCLSHHDNCRKLT 145 **9....66666777*********************************************************** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358 E+++l++ i+n+va e +er++r e+ + Wr + G+ + +ls +a +qa+lll++ + +d y++ ++ ++l cra_locus_17664_iso_1_len_727_ver_3 146 EQVYLREMIQNMVAEEDSERTQRFESINFWRGLCARLGLMETELSPSALCQASLLLKRSAcQDFYTLVNDGKCL 219 ************************************************************9999********** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +lgWk+ p++s+SaW+ cra_locus_17664_iso_1_len_727_ver_3 220 ILGWKGTPILSISAWK 235 ***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 26.307 | 1 | 214 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-56 | 7 | 235 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
ADRHSCPLEM LKITAVGTSK AMMEETGKWL SSFARTMNLT LSFKIVVSDL KDLKQDLFEV 60 EADETVAVYF GLRLFTVLPW PNHLEAVIGV IKHLKPCAIV MVELEANLNS PVFLERFTEA 120 LCYFSAVFDC AEGCLSHHDN CRKLTEQVYL REMIQNMVAE EDSERTQRFE SINFWRGLCA 180 RLGLMETELS PSALCQASLL LKRSACQDFY TLVNDGKCLI LGWKGTPILS ISAWKSSND |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-23 | 1 | 234 | 151 | 378 | Protein SCARECROW |
5b3h_A | 2e-23 | 1 | 234 | 150 | 377 | Protein SCARECROW |
5b3h_D | 2e-23 | 1 | 234 | 150 | 377 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027067666.1 | 4e-93 | DELLA protein RGL2-like | ||||
Refseq | XP_027072016.1 | 2e-91 | DELLA protein RGL2-like | ||||
TrEMBL | A0A068USZ7 | 3e-89 | A0A068USZ7_COFCA; Uncharacterized protein | ||||
STRING | XP_008351161.1 | 1e-76 | (Malus domestica) | ||||
STRING | XP_008390567.1 | 1e-75 | (Malus domestica) | ||||
STRING | PGSC0003DMT400056232 | 2e-77 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8500 | 17 | 28 |