PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_17345_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 249aa MW: 26759.4 Da PI: 9.8272 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.2 | 3.6e-13 | 170 | 227 | 4 | 60 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklk 60 +++rr++kNRe+A rsR+RK+a++ eLe v +Le+e +L ++e+e+ ++ + +l cra_locus_17345_iso_4_len_1192_ver_3 170 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEEKARLlREEAEQNRERYRQLM 227 689***********************************99853888998888888775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.1E-11 | 167 | 231 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.726 | 169 | 221 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.0E-11 | 169 | 227 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.46E-20 | 171 | 218 | No hit | No description |
SuperFamily | SSF57959 | 1.77E-9 | 171 | 222 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.6E-13 | 172 | 230 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 174 | 189 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
PGVSSVDGAG AVKNVAAVGS KTVDEVWKEI VSGGGGDEGG GRVETMGPRM TLEDFLTKAG 60 AVSEEDVRVA NHTPPPMPLA APSPVAVRPG GYVVDPMMNV QFPVAPGPVV HMQNGPEAFG 120 GLESQLGFGN GMVASASAVI GGQVGNGSTS ARGKRRAAPV EEVALDKATQ QKQRRMIKNR 180 ESAARSRERK QAYTVELESL VTQLEEEKAR LLREEAEQNR ERYRQLMENL IPVVERRRPP 240 RVLRRLNSM |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027106368.1 | 6e-82 | bZIP transcription factor 12-like | ||||
TrEMBL | A0A068TNH0 | 4e-74 | A0A068TNH0_COFCA; Uncharacterized protein | ||||
STRING | XP_009615514.1 | 1e-71 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2771 | 24 | 52 |