PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_17343_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 18555.5 Da PI: 8.4664 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 7.7e-17 | 12 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a +l+g cra_locus_17343_iso_2_len_706_ver_3 12 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVYYLRG 61 59*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.601 | 12 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-29 | 12 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-36 | 12 | 75 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-10 | 13 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-11 | 13 | 24 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-20 | 13 | 70 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.32E-26 | 13 | 71 | No hit | No description |
PRINTS | PR00367 | 5.3E-11 | 51 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
XCCSGKRKSE RPYKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSSPVAAAR AYDTAVYYLR 60 GPTARLNFPE LLAGETAAAL SDLSAAAIRK KAIEVGARVD ALQSSIGGNN EQRNNHHHHQ 120 NREEEHDESP PPSSQIQLKP CWFQEKPDLN EKPEPEDPDV EYW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-14 | 13 | 69 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00595 | DAP | Transfer from AT5G67190 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561035.1 | 9e-82 | PREDICTED: ethylene-responsive transcription factor RAP2-10 | ||||
Swissprot | Q9FH94 | 2e-54 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A2G2XHS4 | 1e-80 | A0A2G2XHS4_CAPBA; Ethylene-responsive transcription factor RAP2-10 | ||||
STRING | PGSC0003DMT400010228 | 9e-80 | (Solanum tuberosum) |
Publications ? help Back to Top | |||
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