PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17343_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 163aa    MW: 18555.5 Da    PI: 8.4664
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17343_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.7e-171261255
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                          ykG+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  cra_locus_17343_iso_1_len_695_ver_3 12 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVYYLRG 61
                                         59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.6011269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-291270IPR001471AP2/ERF domain
SMARTSM003806.6E-361275IPR001471AP2/ERF domain
PfamPF008472.3E-101361IPR001471AP2/ERF domain
PRINTSPR003675.3E-111324IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-201370IPR016177DNA-binding domain
CDDcd000187.32E-261371No hitNo description
PRINTSPR003675.3E-115171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
XCCSGKRKSE RPYKGIRMRK WGKWVAEIRE PNKRSRIWLG SYSSPVAAAR AYDTAVYYLR  60
GPTARLNFPE LLAGETAAAL SDLSAAAIRK KAIEVGARVD ALQSSIGGNN EQRNNHHHHQ  120
NREEEHDESP PPSSQIQLKP CWFQEKPDLN EKPEPEDPDV EYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1413691572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561035.19e-82PREDICTED: ethylene-responsive transcription factor RAP2-10
SwissprotQ9FH942e-54ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A2G2XHS41e-80A0A2G2XHS4_CAPBA; Ethylene-responsive transcription factor RAP2-10
STRINGPGSC0003DMT4000102289e-80(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]