PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_17265_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Nin-like

Protein Properties

Length: 294aa MW: 33755.9 Da PI: 6.6701

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_17265_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49.7	7.1e-16	139	183	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+le l ++ + +i ++A +gvc ++LKriCR++GIkRWP + cra_locus_17265_iso_2_len_912_ver_3 139 GITLELLLQHSDRKIDEVADIVGVCRSTLKRICRKHGIKRWPPKR 183 699***************************************765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.412	119	208	IPR003035	RWP-RK domain
Pfam	PF02042	7.0E-14	140	185	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.48E-12	207	287	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-11	213	287	No hit	No description
Pfam	PF00564	1.0E-4	220	284	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
QIDEFYILEF FFRSGTASGD PRIFVRKLVA ELKRDIEDSD INFPIQTIDE RLCIEVLKVS 60 DGQDDKLDSF ETCTTESPPN SLRHHLGQSQ MMXHDLGHEK VDYNNTPVHD GPNQEGRLTE 120 QGGARRNKRP IRTLDVEYGI TLELLLQHSD RKIDEVADIV GVCRSTLKRI CRKHGIKRWP 180 PKRAKRTNNS QIRQHSTPLA ALRMDTTSTT VLQHGDNILV KAKCGDDLLK FHLSSQAKKL 240 DLENQVLERL NDPSVKSPKI KYLDEDSERP LIACDQDWKE CVQITSQDYN YNVC

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26