PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_17242_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

ERF

Protein Properties

Length: 117aa MW: 13453.8 Da PI: 11.0917

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_17242_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.2	4.1e-18	20	70	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI++ + k+ r +lg+f+taeeAa a++ a++ l+g cra_locus_17242_iso_5_len_505_ver_3 20 KFVGVRQRP-SGRWVAEIKVT---QmKKLRLWLGTFDTAEEAASAYDSAARLLRG 70 799****.7*****4...5667*********************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	7.5E-29	19	78	IPR001471	AP2/ERF domain
Pfam	PF00847	6.3E-12	20	70	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.96E-20	20	79	IPR016177	DNA-binding domain
CDD	cd00018	1.47E-28	20	80	No hit	No description
PROSITE profile	PS51032	20.257	20	78	IPR001471	AP2/ERF domain
SMART	SM00380	2.8E-31	20	84	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-8	21	32	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-8	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MESSQEQAEK HQQVKIYKRK FVGVRQRPSG RWVAEIKVTQ MKKLRLWLGT FDTAEEAASA 60 YDSAARLLRG RNAKTNFTYD NFKFIGMNQT TRLHQLLKLA IMKNLAKSSS SSSXXXL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-15	20	80	14	74	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs) (PubMed:17449807, PubMed:17827349). Binds to the GCC-box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation and maintenance, and nodule development. Necessary for NF-induced gene expression and spontaneous nodulation activated by CCAMK. Functions downstream of CCAMK to activate nodulation gene expression (PubMed:17449807). Involved in early stages of root nodule development. Functions redundantly with ERN2. Is essential with ERN2 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269\|PubMed:17449807, ECO:0000269\|PubMed:17827349, ECO:0000269\|PubMed:23077241, ECO:0000269\|PubMed:27208242}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots from 1 to 21 day after inoculation with Sinorhizobium meliloti (PubMed:17449807). Induced by Nod factors in root hairs (PubMed:17827349). {ECO:0000269\|PubMed:17449807, ECO:0000269\|PubMed:17827349}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027121343.1	4e-38	ethylene-responsive transcription factor ERN3-like
Swissprot	A2Q5W1	2e-24	ERN1_MEDTR; Ethylene-responsive transcription factor ERN1
TrEMBL	A0A068TQF5	1e-38	A0A068TQF5_COFCA; Uncharacterized protein
STRING	VIT_17s0000g04480.t01	1e-33	(Vitis vinifera)
STRING	XP_002512003.1	2e-33	(Ricinus communis)

Publications ? help Back to Top
Cerri MR, et al. Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection. Plant Physiol., 2012. 160(4): p. 2155-72 [PMID:23077241] Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Cerri MR, et al. The Symbiosis-Related ERN Transcription Factors Act in Concert to Coordinate Rhizobial Host Root Infection. Plant Physiol., 2016. 171(2): p. 1037-54 [PMID:27208242]