PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17242_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 122aa    MW: 13880.8 Da    PI: 11.0917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17242_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-182070255
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                         ++ GVr+++ +grWvAeI++    + k+ r +lg+f+taeeAa a++ a++ l+g
  cra_locus_17242_iso_2_len_520_ver_3 20 KFVGVRQRP-SGRWVAEIKVT---QmKKLRLWLGTFDTAEEAASAYDSAARLLRG 70
                                         799******.7*********4...5667***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.3E-291978IPR001471AP2/ERF domain
PfamPF008477.0E-122070IPR001471AP2/ERF domain
CDDcd000189.03E-292080No hitNo description
PROSITE profilePS5103220.2572078IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-202079IPR016177DNA-binding domain
SMARTSM003802.8E-312084IPR001471AP2/ERF domain
PRINTSPR003675.5E-82132IPR001471AP2/ERF domain
PRINTSPR003675.5E-84460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MESSQEQAEK HQQVKIYKRK FVGVRQRPSG RWVAEIKVTQ MKKLRLWLGT FDTAEEAASA  60
YDSAARLLRG RNAKTNFTYD NFKFIGMNQT TRLHQLLKLA IMKNLAKSSS SSSSNSSSHL  120
PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1520801474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121343.14e-39ethylene-responsive transcription factor ERN3-like
TrEMBLA0A068TQF51e-39A0A068TQF5_COFCA; Uncharacterized protein
STRINGVIT_17s0000g04480.t017e-35(Vitis vinifera)