PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_17106_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

bZIP

Protein Properties

Length: 278aa MW: 31856.4 Da PI: 5.6413

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_17106_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.3	5.8e-07	218	251	15	48
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 15 eAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 e+A rsR+R +a++++Le v L + N+ L+ + cra_locus_17106_iso_1_len_1119_ver_3 218 ESAARSRARNQAYTKQLEHDVVRLRETNSWLRRR 251 8***************************999854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.8E-5	218	251	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MNLDELLIKN VISTEDEGNN LVQNQNPPSS SSSSSSSSTF LGNFNLNKNL NSKKPTDDQV 60 WGEIVDQECH NSKRQPTLGE TTLEEFLIRT GVLSLGNQEN VINPPQPLSV IDSMMRMKQQ 120 SDWLKFQMEN CPDHQQIQQQ QQQQKQQGNL PMPLIQGGIV DSHFQVSEIG YDTHQVFDAG 180 YLENQLELPI PLRKMEPAYS ESHLGGEIKQ PYTDEMMESA ARSRARNQAY TKQLEHDVVR 240 LRETNSWLRR RKEVQNRLFS NSHSGPKYQL RRTSSTEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002513853.1	1e-58	ABSCISIC ACID-INSENSITIVE 5-like protein 3 isoform X2
TrEMBL	B9RJD4	2e-57	B9RJD4_RICCO; DNA binding protein, putative
STRING	XP_002513853.1	4e-58	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21454	2	2