PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_17076_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family CPP
Protein Properties Length: 809aa    MW: 87770.5 Da    PI: 6.1132
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_17076_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.15.6e-16508545340
                                   TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                           +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  cra_locus_17076_iso_2_len_2775_ver_3 508 CKRCNCKKSKCLKLYCECFAAGVYCVEPCSCQECFNKP 545
                                           89**********************************96 PP
2TCR51.22.5e-16592630139
                                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                           ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  cra_locus_17076_iso_2_len_2775_ver_3 592 RHKRGCNCKKSGCLKKYCECYQGGVGCSISCRCEGCKNA 630
                                           589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.8E-16506547IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.557507632IPR005172CRC domain
PfamPF036381.3E-11509544IPR005172CRC domain
SMARTSM011141.1E-17592633IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.1E-12594630IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MGEEGEKGKE EREIEVKEGG KRKEVVVVMD TPERSRNQIA TPVSKFEESP VFNFLNNLSP  60
IKPVKSVHIT QTLNALSFAA LPSIFTSPHV SNLKETRFLR RHQLVDPSKP EFSSDNGNKT  120
AVEEGHAKVV NSSNEQQQNT DLGNSLVEVP EELSNNDCSK LAVALARTLN YECTPVSSSK  180
TSNPAEGKCV SEFASTSGAL VPFGQAVSEK GLFGNGVCTE GISQTSQIGD PAGCEWENLI  240
TDAADLLIFD SPDDVGTANK LLDPATGLYS ETTNDMPKLL GPGEQGDGNE TDNPSTQPGE  300
GSYLKEFSEI QDMLASSSLD NNCKDGALSE KTESEPVSHL YRGMRRRCLV FEMGGTRRKH  360
FDENSSSVSP ILMQDGNTPS SSKQILPMKT GNDSAKRILP GIGLHLNALA TTPKEYKVIK  420
QDASVSGRLV IAPSSTSNFH STVTGKGPVN ESLEMMPIER DMDPDENGVP LLEDPSQASV  480
DMVTEEFNQS SPKKKRRRVE QAGESEGCKR CNCKKSKCLK LYCECFAAGV YCVEPCSCQE  540
CFNKPIHEDT VLATRKQIES RNPLAFAPKV IRSSDSVSEA GDDSSKTPAS ARHKRGCNCK  600
KSGCLKKYCE CYQGGVGCSI SCRCEGCKNA FGRKDGSLFV GAEADLEEDE TEVLDKSTKE  660
RILHKTGSQN DVEQNPESAP PATPFRCPRP FSQGPFSSKR KPPRSSLPSI GGPSSLFANQ  720
GPLAKTSFLP PPQPKFDKHF ERVMEDEEMP DMLVQGNNGS PITGIKSSSP NSKRVSPPHC  780
NFGMSPGRRS SRKLILQSIP AFPSLTPKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1851162914120Protein lin-54 homolog
5fd3_B3e-1851162914120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1492497KKKRRR
2494498KRRRV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027167008.10.0protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLA0A068TT160.0A0A068TT16_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000820980.0(Solanum tuberosum)