PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_17006_iso_2

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

GATA

Protein Properties

Length: 410aa MW: 45727.4 Da PI: 7.9702

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_17006_iso_2	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.3e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ cra_locus_17006_iso_2_len_1820_ver_3 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 **************66666*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	3.7E-10	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.38E-11	5	45	No hit	No description
CDD	cd00202	6.75E-17	6	54	No hit	No description
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.3E-12	7	41	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.2	7	40	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	6.9E-14	7	41	IPR000679	Zinc finger, GATA-type
Pfam	PF13919	5.8E-10	284	369	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPDDFEDY 60 RTSRLKTIST KNKEAKVHKR KQIQDNADFG VFASDSSQGF RKALDEDTSN RSSSGSAISN 120 SESCAQFGSA EASDLTGPAQ PMVWDSMVPS RKRTCVNRPK PSSVEKLSKD LYTILHEQQS 180 YFSGSSEEDL LFETDKPMVS VEIGHGSVLI RHPSTIAREE ESEASSLSVD NKLHTPNEAY 240 SRLTPFPVHN NNFSKGVDLP SPGIEKNKKP TGQGTEQEQP KRDKDQIEKL AILGHHNSPL 300 RHVDLKDVLN YGEFVSCLTK EEQQQLLKYL PSVDISGPPD SLKSMFGSLQ FEENLSSFQK 360 LLAGGVFDNT ISGVKIEDCR ILKRFVLCNL IKSKWVEKYS LLKVRAVYQN

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPDDFEDY  60
RTSRLKTIST KNKEAKVHKR KQIQDNADFG VFASDSSQGF RKALDEDTSN RSSSGSAISN  120
SESCAQFGSA EASDLTGPAQ PMVWDSMVPS RKRTCVNRPK PSSVEKLSKD LYTILHEQQS  180
YFSGSSEEDL LFETDKPMVS VEIGHGSVLI RHPSTIAREE ESEASSLSVD NKLHTPNEAY  240
SRLTPFPVHN NNFSKGVDLP SPGIEKNKKP TGQGTEQEQP KRDKDQIEKL AILGHHNSPL  300
RHVDLKDVLN YGEFVSCLTK EEQQQLLKYL PSVDISGPPD SLKSMFGSLQ FEENLSSFQK  360
LLAGGVFDNT ISGVKIEDCR ILKRFVLCNL IKSKWVEKYS LLKVRAVYQN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027081227.1	0.0	GATA transcription factor 26 isoform X1
Refseq	XP_027081228.1	0.0	GATA transcription factor 26 isoform X2
Refseq	XP_027181532.1	0.0	GATA transcription factor 26 isoform X1
Refseq	XP_027181533.1	0.0	GATA transcription factor 26 isoform X2
Swissprot	Q8W4H1	1e-130	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A0A068UJE3	0.0	A0A068UJE3_COFCA; Uncharacterized protein
STRING	XP_009772103.1	0.0	(Nicotiana sylvestris)