PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_16909_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 483aa    MW: 51682.1 Da    PI: 9.3357
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_16909_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.21.9e-15272317555
                                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                           hn+ Er+RRd+iN+++  L++l+P++      K +Ka++L +++eY+k+Lq
  cra_locus_16909_iso_1_len_1478_ver_3 272 HNQSERKRRDKINQRMKALQRLVPNS-----SKTDKASMLDEVIEYLKQLQ 317
                                           9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-19265329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-17272321No hitNo description
PfamPF000105.0E-13272317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-18272325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-18273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
LRNYLQTHSM YQLDYEVTEL TWENGQLTLH GLGHPRMPNR AAANSSNFFN RYNSAGGSGG  60
GGTAGTLESI VNQATNTQPH DKRPCEGASG VDDELVPWFH ENRARGSNPA VAPVRSVPST  120
ALSMDALVPC GRNRGKNHQV QGSNTCGGGG VVGGNSTRVG SCSGAGGERA REARIPHELS  180
SRAPDQSVSG QGSRQVTRET YEKEFGMAGF TSTSLGSPGN TSSTKQCTKT ADDHDSFCHS  240
RNQRETEEAE DKKKGSGKLS VTMKRSRAAA IHNQSERKRR DKINQRMKAL QRLVPNSSKT  300
DKASMLDEVI EYLKQLQGQV QLMQRLNMSP LMASFIQQQI QMSMMASMGL GGVNVGIGFV  360
DVNAMAAAHV AAAGRPNIAG MPSHVMQVPF IPAAAVTPWD GTVASGAGLP VHSSTPSMPE  420
TMPAYFTYPP QAVPLQPMPL QSMPAPLQSM LVPVDFTRMT GLYPQPFQEP SSSGLASAKD  480
KPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280ERKRRD
2276281RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43672132