PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16904_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22068.3 Da PI: 6.7831 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.3e-18 | 2 | 49 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +GVr+++ +g+Wv+eIr+p +r++lg+f taeeAaka+++a+ + g cra_locus_16904_iso_1_len_826_ver_3 2 RGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAAKAYDEAAILMSG 49 8*****9.**********8.....334*********************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00367 | 1.1E-9 | 1 | 12 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.259 | 1 | 57 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-36 | 2 | 63 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 2 | 57 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.29E-32 | 2 | 58 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-19 | 2 | 59 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-11 | 2 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 23 | 39 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010143 | Biological Process | cutin biosynthetic process | ||||
GO:0010166 | Biological Process | wax metabolic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
XRGVRQRHWG SWVSEIRHPL LKRRVWLGTF ETAEEAAKAY DEAAILMSGR NAKTNFPIEM 60 NNDNNASTSS ISSSSSSSGP SLSAVLGAKL RKCCKSPSPS LTCLRLDTEN SHIGVWQKRA 120 GPRSDSNWVM TVDLGKKKDD DLEQGSSTTT TSFNQTSQQP PATTTAAVEI TSEGTTSSVE 180 KTMDEEERIA LQMIEELLNR N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-17 | 2 | 61 | 7 | 67 | ATERF1 |
3gcc_A | 8e-17 | 2 | 61 | 7 | 67 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015870387.1 | 3e-88 | ethylene-responsive transcription factor WIN1 | ||||
Swissprot | Q9XI33 | 3e-77 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A2G9HFS6 | 3e-87 | A0A2G9HFS6_9LAMI; Uncharacterized protein | ||||
STRING | XP_006427266.1 | 2e-84 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1352 | 24 | 76 |