PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_16841_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | G2-like | ||||||||
Protein Properties | Length: 347aa MW: 38807.4 Da PI: 8.6034 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.1 | 3.9e-33 | 58 | 111 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH+ Fv+av++LGG+e+AtPk +l+lm+vkgLt++hvkSHLQ+YR+ cra_locus_16841_iso_1_len_1362_ver_3 58 PRLRWTPDLHHTFVQAVQRLGGQERATPKLVLQLMNVKGLTIAHVKSHLQMYRS 111 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-31 | 54 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.944 | 54 | 114 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.13E-15 | 56 | 112 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-24 | 58 | 113 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.5E-10 | 59 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MESVEDGNSS DEVIVMKISS SSSSSNNSSV DDVIGDEKKI INSTSTAGVR QYKRSKVPRL 60 RWTPDLHHTF VQAVQRLGGQ ERATPKLVLQ LMNVKGLTIA HVKSHLQMYR SKKIDDHGQV 120 INERNNPMGN IDHILGKFWQ FPTLDRPGMT SSFSNNYSSY YDDNWSSKMM NWMAMAGHGC 180 TDQNVNNIRK PPESAAYHGR SLVEQIYARS TANAKKVPFF SGKYPNFTMQ ESKARTTTDS 240 EEEGKKEELL NVALKRKASN GNGNGIDLSL SLSMKNNNMR QEDEGIISKR KRTHWDIKEE 300 EEVDSNLLCL SLSSSSSAAS KTESYDSIDL NVSIKNPTLA STLDLTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-19 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-19 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-19 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-19 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-19 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-19 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-19 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-19 | 59 | 113 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 288 | 293 | KRKRTH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027090439.1 | 3e-67 | uncharacterized protein LOC113711467 isoform X2 | ||||
Refseq | XP_027174711.1 | 3e-68 | uncharacterized protein LOC113774362 | ||||
TrEMBL | A0A068ULT3 | 6e-66 | A0A068ULT3_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7450 | 20 | 29 |